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Job DescriptionP77622
Confidence100.00%DateThu Jan 5 12:31:12 GMT 2012
Rank6Aligned Residues229
% Identity33%Templatec2it1B_
PDB info PDB header:transport proteinChain: B: PDB Molecule:362aa long hypothetical maltose/maltodextrin PDBTitle: structure of ph0203 protein from pyrococcus horikoshii
Resolution1.94 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........
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Query Sequence  MSDTLLTLRDVHINFPARKNWLGKTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQ.
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Template Sequence  VE. . . IKLENIVKKF. . . . . . . . . . . GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDV
Template Known Secondary structure 

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TT


TTSSTSS

STT
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   80.........90.........100.........110.........120.........130.........140.........150..
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Query Sequence  . . . . . . . RIMQMVFQDPLSSLNPRLPVWRIITEPLWIAKRSSEQQRRALAEELAVQVGIRPEYLDRLPHAFSGGQRQRIA
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Template Sequence  TELPPKDRNVGLVFQNWA. . LYPHMTVYKNIAFPLE. LRKAPREEIDKKVREVAKMLHID. KLLNRYPWQLSGGQQQRVA
Template Known Secondary structure  TTS
T
TT

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TTS
.TT

TT
G.GGTTS
GGGS
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   153......160.........170.........180.........190.........200.........210.........220.........230..
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Query Sequence  IARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLT
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Template Sequence  IARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYY
Template Known Secondary structure  TT

SSGGGGS
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   144.....150.........160.........170.........180.........190.........200.........210.........220...
 
   233......240.......
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Query Sequence  APAHPYTRLLLDSLP
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Template Sequence  KPKYKFVGGFLGNPP
Template Known Secondary structure  S
SBSBTTB
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   224.....230........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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