Job Description P77622 Confidence 100.00% Date Thu Jan 5 12:31:12 GMT 2012 Rank 53 Aligned Residues 209 % Identity 26% Template c2ghiD_ PDB info PDB header:transport protein Chain: D: PDB Molecule:transport protein; PDBTitle: crystal structure of plasmodium yoelii multidrug resistance2 protein 2 Resolution 2.20 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		M	S	D	T	L	L	T	L	R	D	V	H	I	N	F	P	A	R	K	N	W	L	G	K	T	T	E	H	V	H	A	I	N	G	I	D	L	Q	I	R	R	G	E	T	L	G	I	V	G	E	S	G	C	G	K	S	T	L	A	Q	L	L	M	G	M	L	Q	P	S	H	G	Q	Y	I	R	S	G	S	Q	.
Query Conservation																																																																																	.
Alig confidence				.														.	.	.	.	.	.	.	.	.	.	.	.	.																																									.										.
Template Conservation				.														.	.	.	.	.	.	.	.	.	.	.	.	.																																									.
Template Sequence		F	G	.	V	N	I	E	F	S	D	V	N	F	S	Y	H	.	.	.	.	.	.	.	.	.	.	.	.	.	R	T	L	K	S	I	N	F	F	I	P	S	G	T	T	C	A	L	V	G	H	T	G	S	G	K	S	T	I	A	K	L	L	Y	R	F	Y	D	A	E	.	G	D	I	K	I	G	G	K	N	V
Template Known Secondary structure		T		.														.	.	.	.	.	.	.	.	.	.	.	.	.		S										T	T								S	T	T	S	S									T	T	S	S				.						T	T			G
Template Predicted Secondary structure				.														.	.	.	.	.	.	.	.	.	.	.	.	.																																									.
Template SS confidence
		14	.		.	.	.	.	20	.	.	.	.	.	.	.	.														.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.
											80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																																													.
Query SS confidence		.	.	.	.	.	.	.	.	.																																																													.
Query Sequence		.	.	.	.	.	.	.	.	.	R	I	M	Q	M	V	F	Q	D	P	L	S	S	L	N	P	R	L	P	V	W	R	I	I	T	E	P	L	W	I	A	K	R	S	S	E	Q	Q	R	R	A	L	A	E	E	L	A	V	Q	V	G	I	R	P	E	Y	L	D	R	L	.	P	H	A	F	S	G	G	Q	R	Q
Query Conservation		.	.	.	.	.	.	.	.	.																																																													.
Alig confidence		.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.																																									.
Template Conservation																								.	.	.	.	.	.	.
Template Sequence		N	K	Y	N	R	N	S	I	R	S	I	I	G	I	V	P	Q	D	T	I	L	F	.	.	.	.	.	.	.	N	E	T	I	K	Y	N	I	L	Y	G	K	L	D	A	T	D	E	E	V	I	K	A	T	K	S	A	Q	L	Y	D	F	I	E	A	L	P	K	K	W	D	T	I	V	L	S	G	G	E	R	Q
Template Known Secondary structure		G	G	S							T	T						S	S					.	.	.	.	.	.	.	S	S	B							T	T	S	T	T													T	T								S	T	T	G	G	G		B
Template Predicted Secondary structure																								.	.	.	.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.								.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	A	I	A	R	A	L	S	S	Q	P	D	V	I	V	L	D	E	P	T	S	A	L	D	I	S	V	Q	A	Q	I	L	N	L	L	V	T	L	Q	E	N	H	G	L	T	Y	V	L	I	S	H	N	V	S	V	I	R	H	M	S	D	R	V	A	V	M	Y	L	G	Q	I	V	E	L	G	D	A	Q	Q
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.	.								.															.
Template Conservation																											.	.	.	.	.	.	.	.	.	.								.															.
Template Sequence		R	I	A	I	A	R	C	L	L	K	D	P	K	I	V	I	F	D	D	S	K	T	E	Y	L	.	.	.	.	.	.	.	.	.	.	F	Q	K	A	V	E	D	.	N	R	T	L	I	I	I	A	H	R	L	S	T	I	.	S	S	A	E	S	I	I	L	L	N	K	G	K	I	V	E	K	G	T	H	K	D
Template Known Secondary structure											T			S													.	.	.	.	.	.	.	.	.	.								.									S	S	G	G	G	S	.	T	T		S							T	T
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.								.															.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.											.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.	.	.		.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	T	A	P	A	H	P	Y	T	R	L	L	L	D	S
Query Conservation
Alig confidence					.	.
Template Conservation					.	.
Template Sequence		L	L	K	.	.	L	N	G	E	Y	A	E	M	W	N	M
Template Known Secondary structure					.	.		T	S								T
Template Predicted Secondary structure					.	.
Template SS confidence
		240	.	.			.	.	.	.	.	.	.	250	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions