Job Description P77622 Confidence 100.00% Date Thu Jan 5 12:31:12 GMT 2012 Rank 12 Aligned Residues 231 % Identity 28% Template c1vciA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sugar-binding transport atp-binding protein; PDBTitle: crystal structure of the atp-binding cassette of multisugar2 transporter from pyrococcus horikoshii ot3 complexed with3 atp Resolution 2.90 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	D	T	L	L	T	L	R	D	V	H	I	N	F	P	A	R	K	N	W	L	G	K	T	T	E	H	V	H	A	I	N	G	I	D	L	Q	I	R	R	G	E	T	L	G	I	V	G	E	S	G	C	G	K	S	T	L	A	Q	L	L	M	G	M	L	Q	P	S	H	G	Q	Y	I	R	S	G	S	Q	R
Query Conservation
Alig confidence					.	.											.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.											.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	V	E	.	.	V	K	L	E	N	L	T	K	R	F	.	.	.	.	.	.	.	.	.	.	.	G	N	F	T	A	V	N	K	L	N	L	T	I	K	D	G	E	F	L	V	L	L	G	P	S	G	C	G	K	T	T	T	L	R	M	I	A	G	L	E	E	P	T	E	G	R	I	Y	F	G	D	R	D	V
Template Known Secondary structure					.	.											.	.	.	.	.	.	.	.	.	.	.	T	T													T	T									T	T	S	S										T	S	S			S							T	T
Template Predicted Secondary structure					.	.											.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		10	.	.			.	.	.	.	.	.	.	20	.	.												.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		I	M	Q	M	V	F	Q	D	P	L	S	S	L	N	P	R	L	P	V	W	R	I	I	T	E	P	L	W	I	A	K	R	S	S	E	Q	Q	R	R	A	L	A	E	E	L	A	V	Q	V	G	I	R	P	E	Y	L	D	R	L	P	H	A	F	S	G	G	Q	R	Q	R	I	A	I	A	R	A	L	S	S	Q
Query Conservation
Alig confidence																										.	.	.																										.
Template Conservation																										.	.	.																										.
Template Sequence		T	Y	L	P	P	K	D	R	N	I	S	M	V	F	Q	H	M	T	V	Y	E	N	I	A	.	.	.	F	P	L	K	K	F	P	K	D	E	I	D	K	R	V	R	W	A	A	E	L	L	Q	I	E	.	E	L	L	N	R	Y	P	A	Q	L	S	G	G	Q	R	Q	R	V	A	V	A	R	A	I	V	V	E
Template Known Secondary structure		T	T	S		G	G	G	T	T																.	.	.	T	T																				T	T		G	.	G	G	T	T			G	G	G			S	S												T	T
Template Predicted Secondary structure																										.	.	.																										.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100				.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		P	D	V	I	V	L	D	E	P	T	S	A	L	D	I	S	V	Q	A	Q	I	L	N	L	L	V	T	L	Q	E	N	H	G	L	T	Y	V	L	I	S	H	N	V	S	V	I	R	H	M	S	D	R	V	A	V	M	Y	L	G	Q	I	V	E	L	G	D	A	Q	Q	V	L	T	A	P	A	H	P	Y	T	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	D	V	L	L	M	D	E	P	L	S	N	L	D	A	K	L	R	V	A	M	R	A	E	I	K	K	L	Q	Q	K	L	K	V	T	T	I	Y	V	T	H	D	Q	V	E	A	M	T	M	G	D	R	I	A	V	M	N	R	G	Q	L	L	Q	I	G	S	P	T	E	V	Y	L	R	P	N	S	V	F	V	A
Template Known Secondary structure			S						S	T	T	T	T	S																												S										S							T	T														S		S	B
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		241	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	L	D	S	L	P	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	F	I	G	A	P	E	M
Template Known Secondary structure				S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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