Job Description P77622 Confidence 100.00% Date Thu Jan 5 12:31:12 GMT 2012 Rank 7 Aligned Residues 227 % Identity 31% Template c1q1bD_ PDB info PDB header:transport protein Chain: D: PDB Molecule:maltose/maltodextrin transport atp-binding protein malk; PDBTitle: crystal structure of e. coli malk in the nucleotide-free form Resolution 2.80 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Query SS confidence																																																																										.	.	.	.	.	.	.	.
Query Sequence		L	T	L	R	D	V	H	I	N	F	P	A	R	K	N	W	L	G	K	T	T	E	H	V	H	A	I	N	G	I	D	L	Q	I	R	R	G	E	T	L	G	I	V	G	E	S	G	C	G	K	S	T	L	A	Q	L	L	M	G	M	L	Q	P	S	H	G	Q	Y	I	R	S	G	.	.	.	.	.	.	.	.
Query Conservation																																																																										.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.																																																				.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	Q	L	Q	N	V	T	K	A	W	.	.	.	.	.	.	.	.	.	.	.	G	E	V	V	V	S	K	D	I	N	L	D	I	H	E	G	E	F	V	V	F	V	G	P	S	G	C	G	K	S	T	L	L	R	M	I	A	G	L	E	T	I	T	S	G	D	L	F	I	G	E	K	R	M	N	D	T	P	P
Template Known Secondary structure												.	.	.	.	.	.	.	.	.	.	.	T	T													T	T								S	G	G	G	S								T	T	T	S	S				S	S					T	T				T	T			S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.												.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	R	I	M	Q	M	V	F	Q	D	P	L	S	S	L	N	P	R	L	P	V	W	R	I	I	T	E	P	L	W	I	A	K	R	S	S	E	Q	Q	R	R	A	L	A	E	E	L	A	V	Q	V	G	I	R	P	E	Y	L	D	R	L	P	H	A	F	S	G	G	Q	R	Q	R	I	A	I	A	R	A	L
Query Conservation
Alig confidence													.	.																						.																					.
Template Conservation													.	.																						.																					.
Template Sequence		A	E	R	G	V	G	M	V	F	Q	S	.	.	Y	A	L	Y	P	H	L	S	V	A	E	N	M	S	F	G	L	K	L	A	G	.	A	K	K	E	V	I	N	Q	R	V	N	Q	V	A	E	V	L	Q	L	A	.	H	L	L	D	R	K	P	K	A	L	S	G	G	Q	R	Q	R	V	A	I	G	R	T	L
Template Known Secondary structure		S	T	T					B		S		.	.					T	T	S						T	T	T	T	T	T	S	S	S	.	S	T	T	T	T	T	T	T					T	T	G	G	G	T		T	.	T		S	S					G	G	G	T	T	T	S	S	S	S	T	T
Template Predicted Secondary structure													.	.																						.																					.
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.			.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.		.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.		.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	Q	P	D	V	I	V	L	D	E	P	T	S	A	L	D	I	S	V	Q	A	Q	I	L	N	L	L	V	T	L	Q	E	N	H	G	L	T	Y	V	L	I	S	H	N	V	S	V	I	R	H	M	S	D	R	V	A	V	M	Y	L	G	Q	I	V	E	L	G	D	A	Q	Q	V	L	T	A	P	A	H	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	A	E	P	S	V	F	L	L	D	E	P	L	S	N	L	D	A	A	L	R	V	Q	M	R	I	E	I	S	R	L	H	K	R	L	G	R	T	M	I	Y	V	T	H	D	Q	V	E	A	M	T	L	A	D	K	I	V	V	L	D	A	G	R	V	A	Q	V	G	K	P	L	E	L	Y	H	Y	P	A	D	R
Template Known Secondary structure		T	T			S				B	S	S	T	T	T	T			T	T	T															T	T								S										S							T	T														S		S	B
Template Predicted Secondary structure
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	T	R	L	L	L	D	S	L	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	V	A	G	F	I	G	S	P	K
Template Known Secondary structure							S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		229	230	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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