Job Description P0AFB8 Confidence 99.72% Date Thu Jan 5 11:25:50 GMT 2012 Rank 121 Aligned Residues 169 % Identity 15% Template d1qo0d_ SCOP info Flavodoxin-like CheY-like Positive regulator of the amidase operon AmiR Resolution 2.25

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	W	V	V	D	D	D	S	S	I	R	W	V	L	E	R	A	L	A	G	A	G	L	T	C	T	T	F	E	N	G	A	E	V	L	E	A	L	A	S	K	T	P	D	V	L	L	S	D	I	R	M	P	G	M	D	G	L	A	L	L	K	Q	I	K	Q	R	H	P	M	L	P	V	I	I	M	T	A	H
Query Conservation
Alig confidence																																						.	.	.	.																												.
Template Conservation																																						.	.	.	.																												.
Template Sequence		Q	V	L	V	L	N	P	P	G	E	V	S	D	A	L	V	L	Q	L	I	R	I	G	C	S	V	R	Q	C	W	P	P	P	E	A	F	.	.	.	.	D	V	P	V	D	V	V	F	T	S	I	F	Q	N	R	H	H	D	E	I	A	A	L	L	A	A	G	.	T	P	R	T	T	L	V	A	L	V	E	Y
Template Known Secondary structure							S		T	T														T								S			S	S		.	.	.	.	S	S			S								S	S	T												S	.		T	T
Template Predicted Secondary structure																																						.	.	.	.																												.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.					50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.		.	.	.	80	.	.	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	D	L	D	A	A	V	S	A	Y	Q	Q	G	A	F	D	Y	L	P	K	P	F	D	I	D	E	A	V	A	L	V	E	R	A	I	S	H	Y	Q	E	Q	Q	Q	P	R	N	V	Q	L	N	G	P	T	T	D	I	I	G	E	A	P	A	M	Q	D	V	F	R	I	I	G	R	L	S	R	S	S	I	S	V
Query Conservation
Alig confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	S	P	A	V	L	S	Q	I	I	E	L	E	C	H	G	V	I	T	Q	P	L	D	A	H	R	V	L	P	V	L	V	S	A	R	R	I	S	E	E	M	A	K	L	K	Q	K	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	Q	L	Q	D	R	I	A	G	Q	A	R	I	N	Q	A	K	V
Template Known Secondary structure			S											T		S					S	S			G	G	G																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.															.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	N	G	E	S	G	T	G	K	E	L	V	A	H	A	L	H	R	H	S	P	R	A	K	A	P	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	M	Q	R	H	G	W	D	E	R	E	A	H	Q	H	L	S	R	E	A	M	K	R	R	E	P	I
Template Known Secondary structure								T															T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions