Job Description P0AFB8 Confidence 98.20% Date Thu Jan 5 11:25:50 GMT 2012 Rank 213 Aligned Residues 215 % Identity 8% Template c3te6A_ PDB info PDB header:gene regulation Chain: A: PDB Molecule:regulatory protein sir3; PDBTitle: crystal structure of the s. cerevisiae sir3 aaa+ domain Resolution 2.80 Å

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		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.			.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.						.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure																				.	.																												.	.	.	.	.																	.
Query SS confidence																				.	.																												.	.	.	.	.																	.
Query Sequence		I	I	G	E	A	P	A	M	Q	D	V	F	R	I	I	G	R	L	.	.	S	R	S	S	I	S	V	L	I	N	G	E	S	G	T	G	K	E	L	V	A	H	A	L	H	R	H	.	.	.	.	.	S	P	R	A	K	A	P	F	I	A	L	N	M	A	A	I	.	P	K	D	L	I	E	S	E	L	F	G
Query Conservation																				.	.																												.	.	.	.	.																	.
Alig confidence																				.	.																												.	.	.	.	.																	.
Template Conservation
Template Sequence		L	K	S	Q	V	E	D	F	T	R	I	F	L	P	I	Y	D	S	L	X	S	S	Q	N	K	L	F	Y	I	T	N	A	D	D	S	T	K	F	Q	L	V	N	D	V	X	D	E	L	I	T	S	S	A	R	K	E	L	P	I	F	D	Y	I	H	I	D	A	L	E	L	X	D	A	L	Y	E	K	I	W	F
Template Known Secondary structure																						T	T												S																	T	T	T	T	T	S	S										T	T
Template Predicted Secondary structure
Template SS confidence
		549	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.							.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.		.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.		.
Predicted Secondary structure																			.	.	.	.	.	.																	.																																							.
Query SS confidence																			.	.	.	.	.	.																	.																																							.
Query Sequence		H	E	K	G	A	F	T	G	A	N	T	I	R	Q	G	R	F	.	.	.	.	.	.	E	Q	A	D	G	G	T	L	F	L	D	E	I	G	D	M	.	P	L	D	V	Q	T	R	L	L	R	V	L	A	D	G	Q	F	Y	R	V	G	G	Y	A	P	V	K	V	D	V	R	I	I	A	A	T	H	Q	.	N
Query Conservation																			.	.	.	.	.	.																	.																																							.
Alig confidence																			.	.	.	.	.	.																	.														.	.	.	.	.	.	.	.	.	.	.															.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	I	S	K	E	N	G	D	I	S	L	E	A	L	N	F	Y	I	T	N	V	P	K	A	K	K	R	K	T	L	I	L	I	Q	N	P	E	N	L	L	S	E	K	I	L	Q	Y	F	E	K	W	I	S	.	.	.	.	.	.	.	.	.	.	.	S	K	N	S	K	L	S	I	I	C	V	G	G	H	N	V
Template Known Secondary structure				S																		S		G	G	G	S											S	S	S			T												.	.	.	.	.	.	.	.	.	.	.		S	S											S	S
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		631	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.												.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.																					.	.	.	340	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	E	Q	R	V	Q	E	G	K	F	R	E	D	L	F	H	R	L	N	V	I	R	V	H	L	P	P	L	R	E	R	R	E	D	I	P	R	L	A	R	H	F	L	Q	V	A	A	R	E	L	G	V	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	K	L	L	H	P	E
Query Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.																				.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.																				.	.
Template Sequence		T	I	R	E	Q	.	.	.	.	I	N	I	X	P	S	L	K	A	H	F	T	E	I	K	L	N	K	V	.	.	D	K	N	E	L	Q	Q	X	I	I	T	R	L	K	S	L	L	K	P	F	H	V	K	V	N	D	K	K	E	X	T	I	Y	N	N	I	P	D	N	V	I	V	I	N	H	K	I	N	N	K
Template Known Secondary structure							.	.	.	.			T						T	T										.	.																										T	T											T	T
Template Predicted Secondary structure							.	.	.	.																				.	.
Template SS confidence
		702	.	.	.	.					.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.			.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.
		344	.	.	.	.	.	350	.			.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure										.	.
Query SS confidence										.	.
Query Sequence		T	E	A	A	L	T	R	L	.	.	A	W	P	G	N	V	R	Q	L	E	N	T	C	R	W	L	T	V	M	A
Query Conservation										.	.
Alig confidence										.	.
Template Conservation
Template Sequence		I	T	Q	L	I	A	K	N	V	A	N	V	S	G	S	T	E	K	A	F	K	I	C	E	A	A	V	E	I	S
Template Known Secondary structure																S
Template Predicted Secondary structure
Template SS confidence
		784	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions