Job Description P0AFB8 Confidence 96.76% Date Thu Jan 5 11:25:50 GMT 2012 Rank 228 Aligned Residues 199 % Identity 13% Template c3qmzA_ PDB info PDB header:motor protein Chain: A: PDB Molecule:cytoplasmic dynein heavy chain; PDBTitle: crystal structure of the cytoplasmic dynein heavy chain motor domain Resolution 6.00 Å

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		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		F	R	I	I	G	R	L	S	R	S	S	I	S	V	L	I	N	G	E	S	G	T	G	K	E	L	V	A	H	A	L	H	R	H	S	P	R	A	K	A	P	F	I	A	L	N	M	A	A	I	P	K	D	L	I	E	S	E	L	F	G	H	E	K	G	A	F	T	G	A	N	T	I	R	Q	G	R	F	E	Q
Query Conservation
Alig confidence																											.	.	.																																	.	.										.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.																																	.	.										.	.	.	.	.	.	.	.	.
Template Sequence		F	A	T	L	T	D	S	L	H	Q	K	Y	G	G	C	F	F	G	P	A	G	T	G	K	T	.	.	.	E	T	V	K	A	F	G	Q	N	L	G	R	V	V	V	V	F	N	C	D	D	S	F	D	Y	Q	V	L	S	R	L	L	.	.	V	G	I	T	Q	I	G	A	W	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											T	T	T	T							T	T	S	S			.	.	.							T	S	S											S	S	S	S		S								.	.					T	T				.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																											.	.	.																																	.	.										.	.	.	.	.	.	.	.	.
Template SS confidence
		1779	1780	.	.	.	.	.	.	.	.	.	1790	.	.	.	.	.	.	.	.	.	1800	.	.	.				.	.	.	.	.	.	1810	.	.	.	.	.	.	.	.	.	1820	.	.	.	.	.	.	.	.	.	1830	.	.	.	.	.			.	.	.	.	1840	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.										.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.
Query Sequence		A	D	G	G	T	L	F	L	D	E	I	G	D	M	P	L	D	V	Q	T	R	L	L	R	V	L	A	.	.	.	.	.	.	.	.	.	D	G	Q	F	Y	R	V	G	G	Y	A	P	V	K	V	D	V	R	I	I	A	A	T	H	Q	N	L	E	Q	R	V	Q	E	G	K	F	R	E	D	L	F	H	R	L
Query Conservation																													.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																							.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.																																																							.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	G	C	F	D	E	F	N	R	L	D	E	K	V	L	S	A	V	S	A	N	I	Q	Q	I	Q	N	G	L	Q	V	G	K	S	H	I	T	L	L	E	E	E	T	P	L	S	P	H	T	A	V	F	I	T	L	.	.	.	.	.	.	.	.	.	.	.	.	L	P	E	N	L	K	K	S	F
Template Known Secondary structure		.	.	.	.	.					T	T	T	T	S	S																	T	S	T	T	S	S	S						S	S															.	.	.	.	.	.	.	.	.	.	.	.							T	T	T
Template Predicted Secondary structure		.	.	.	.	.																																																							.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
							1845	.	.	.	.	1850	.	.	.	.	.	.	.	.	.	1860	.	.	.	.	.	.	.	.	.	1870	.	.	.	.	.	.	.	.	.	1880	.	.	.	.	.	.	.	.	.	1890	.	.	.	.	.	.	.	.													.	1900	.	.	.	.	.	.	.
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350				.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.
Query SS confidence																																																			.	.	.
Query Sequence		N	V	I	R	V	H	L	P	P	L	R	E	R	R	E	D	I	P	R	L	A	R	H	F	L	Q	V	A	A	R	E	L	G	V	E	A	K	L	L	H	P	E	T	E	A	A	L	T	R	.	.	.	L	A	W	P	G	N	V	R	Q	L	E	N	T	C	R	W	L	T	V	M	A	A	G	Q	E	V	L	I
Query Conservation																																																			.	.	.
Alig confidence							.					.																.	.																						.	.	.					.	.
Template Conservation							.					.																.	.																													.	.
Template Sequence		R	E	F	S	M	.	K	S	Q	S	.	G	T	I	A	E	M	I	L	Q	I	M	G	F	E	D	.	.	S	K	S	L	A	S	K	I	V	H	F	L	E	L	L	S	S	K	C	S	S	M	N	H	Y	H	F	G	.	.	L	R	T	L	K	G	V	L	R	N	C	S	P	L	I	S	E	F	G	E	G	E
Template Known Secondary structure							.					.													T	S	S	.	.																					S	S	S						.	.																		S	S		S	S
Template Predicted Secondary structure							.					.																.	.																													.	.
Template SS confidence
		1917	.	.	1920	.		.	.	.	.		.	.	.	.	1930	.	.	.	.	.	.	.	.	.	1940			.	.	.	.	.	.	.	.	.	1950	.	.	.	.	.	.	.	.	.	1960	.	.	.	.	.	.	.	.			.	1970	.	.	.	.	.	.	.	.	.	1980	.	.	.	.	.	.	.	.	.	1990
		379	380	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	D	L	P	G	E	L	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	T	V	V	E	S	L	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		1992	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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