Job Description P0AFB8 Confidence 99.04% Date Thu Jan 5 11:25:50 GMT 2012 Rank 174 Aligned Residues 225 % Identity 22% Template c3cf1C_ PDB info PDB header:transport protein Chain: C: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: structure of p97/vcp in complex with adp/adp.alfx Resolution 4.40 Å

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		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.												.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	Q	P	R	N	V	Q	L	N	G	P	T	T	D	I	I	G	E	A	P	A	M	Q	D	V	F	R	I	I	G	R	.	.	.	.	.	.	.	.	.	.	.	L	S	R	S	S	I	S	V	L	I	N	G	E	S	G	T	G	K	E	L	V	A	H	A	L	H	R	H	S	P	R	A	K	A	P	F	I	A
Query Conservation																																	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.																													.	.	.
Template Conservation																																																																								.	.	.
Template Sequence		R	E	T	V	V	E	V	P	Q	V	T	W	E	D	I	G	G	L	E	D	V	K	R	E	L	Q	E	L	V	Q	Y	P	V	E	H	P	D	K	F	L	K	F	G	M	T	P	S	K	G	V	L	F	Y	G	P	P	G	C	G	K	T	L	L	A	K	A	I	A	N	E	.	.	.	C	Q	A	N	F	I	S
Template Known Secondary structure			S										T	T	T	T		S																								T	S						S								T	T	S													.	.	.	T	T
Template Predicted Secondary structure																																																																								.	.	.
Template SS confidence
		465	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.				.	.	.	.	.	540	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.															.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	N	M	A	A	I	P	K	D	L	I	E	S	E	L	F	G	H	E	K	G	A	F	T	G	A	N	T	I	R	Q	G	R	F	E	Q	A	D	G	G	T	L	F	L	D	E	I	G	D	M	P	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	Q	T	R	L	L	R	V	L	A	D	G	Q
Query Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Template Conservation					.	.	.	.	.	.	.	.	.																																																																			.	.
Template Sequence		I	K	G	.	.	.	.	.	.	.	.	.	P	E	L	L	T	M	W	F	G	E	S	E	A	N	V	R	E	I	F	D	K	A	R	Q	A	A	P	C	V	L	F	F	D	E	L	D	S	I	A	K	A	R	G	G	N	I	G	D	G	G	G	A	A	D	R	V	I	N	Q	I	L	T	E	M	D	G	.	.
Template Known Secondary structure					.	.	.	.	.	.	.	.	.								T	T	T		T							T	T	T	T	T	T	T		S						S	S	G	G	G	G					T	T	T	T		S	S			S														S	.	.
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.																																																																			.	.
Template SS confidence
		542	.	.										.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.				.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.
Query SS confidence																									.	.	.
Query Sequence		F	Y	R	V	G	G	Y	A	P	V	K	V	D	V	R	I	I	A	A	T	H	Q	N	.	.	.	L	E	Q	R	V	Q	E	G	K	F	R	E	D	L	F	H	R	L	N	V	I	R	V	H	L	P	P	L	R	E	R	R	E	D	I	P	R	L	A	R	H	F	L	Q	V	A	A	R	E	L	G	V	E	A
Query Conservation																									.	.	.
Alig confidence		.	.	.	.	.	.	.																	.	.	.													.	.	.	.	.	.	.															.	.	.	.										.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.																																.	.	.	.	.	.	.															.	.	.	.										.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	M	S	T	K	K	N	V	F	I	I	G	A	T	N	R	P	D	I	I	D	P	A	I	L	R	P	G	R	L	D	Q	.	.	.	.	.	.	.	L	I	Y	I	P	L	P	D	E	K	S	R	V	A	.	.	.	.	I	L	K	A	N	L	R	K	S	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	S		T	T	S	S								S		G	G	G			G	G	G	T	S	T	T	T	S			.	.	.	.	.	.	.									T	T					.	.	.	.						T	T	T	S	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.																																.	.	.	.	.	.	.															.	.	.	.										.	.	.	.	.	.	.	.
Template SS confidence
									611	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.								.	.	.	.	.	.	.	.	650	.	.	.	.	.					.	.	.	.	660	.	.	.	.
		338	.	340	.	.	.	.		.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.									.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure									.																												.	.	.	.	.	.	.	.
Query SS confidence									.																												.	.	.	.	.	.	.	.
Query Sequence		K	L	L	H	P	E	T	.	E	A	A	L	T	R	L	A	W	P	G	N	V	R	Q	L	E	N	T	C	R	W	L	T	V	M	A	.	.	.	.	.	.	.	.	A	G	Q	E	V	L	I	Q	D	L	P	G	E	L	F	E	S	T	V	A
Query Conservation									.																												.	.	.	.	.	.	.	.
Alig confidence		.							.																												.	.	.	.	.	.	.	.
Template Conservation		.
Template Sequence		.	P	V	A	K	D	V	D	L	E	F	L	A	K	M	T	N	G	F	S	G	A	D	L	T	E	I	C	Q	R	A	C	K	L	A	I	R	E	S	I	E	S	E	I	V	P	E	I	R	R	D	H	F	E	E	A	M	R	F	A	R	R	S
Template Known Secondary structure		.		B		S	S							T	T	T		S	S															T	T														B										T	T				S
Template Predicted Secondary structure		.
Template SS confidence
			665	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions