Job Description P0AFB8 Confidence 99.11% Date Thu Jan 5 11:25:50 GMT 2012 Rank 169 Aligned Residues 222 % Identity 24% Template c3b9pA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:cg5977-pa, isoform a; PDBTitle: spastin Resolution 2.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.											.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	Q	Q	P	R	N	V	Q	L	N	G	P	T	T	D	I	I	G	E	A	P	A	M	Q	D	V	F	R	I	I	.	.	.	.	.	.	.	.	.	.	G	R	L	S	R	S	S	I	S	V	L	I	N	G	E	S	G	T	G	K	E	L	V	A	H	A	L	H	R	H	S	P	R	A	K	A	P	F	I	A
Query Conservation																																.	.	.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.	.	.																															.	.	.
Template Conservation																																																																								.	.	.
Template Sequence		L	D	E	I	V	E	G	G	A	K	V	E	W	T	D	I	A	G	Q	D	V	A	K	Q	A	L	Q	E	M	V	I	L	P	S	V	R	P	E	L	F	T	G	L	R	A	P	A	K	G	L	L	L	F	G	P	P	G	N	G	K	T	L	L	A	R	A	V	A	T	E	.	.	.	C	S	A	T	F	L	N
Template Known Secondary structure			T	T	T	B			S	S				G	G	G	S														T							G	G	G	S		G	G	G				S						S	S	S	S	S													.	.	.	T	T
Template Predicted Secondary structure																																																																								.	.	.
Template SS confidence
		470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.				540	.	.	.	.	.	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.				.	.	.	.	.	.	.	.	240	.	.	.	.							.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure																																							.	.	.														.	.	.	.	.	.
Query SS confidence																																							.	.	.														.	.	.	.	.	.
Query Sequence		L	N	M	A	A	I	P	K	D	L	I	E	S	E	L	F	G	H	E	K	G	A	F	T	G	A	N	T	I	R	Q	G	R	F	E	Q	A	.	.	.	D	G	G	T	L	F	L	D	E	I	G	D	M	.	.	.	.	.	.	P	L	D	V	Q	T	R	L	L	R	V	L	A	D	G	Q	F	Y	R	V	G
Query Conservation																																							.	.	.														.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.												.	.	.														.	.	.	.	.	.															.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.
Template Sequence		I	S	A	A	S	L	T	S	K	Y	V	G	D	G	.	.	.	.	.	.	.	.	.	.	.	.	E	K	L	V	R	A	L	F	A	V	A	R	H	M	Q	P	S	I	I	F	I	D	E	V	D	S	L	L	S	E	R	E	A	S	R	R	L	K	T	E	F	L	V	E	F	D	G	.	.	.	.	.	.	.
Template Known Secondary structure				S	T	T	T	S	S	S	S		S			.	.	.	.	.	.	.	.	.	.	.	.														T		S							T	G	G	G	T	S	B					S														.	.	.	.	.	.	.
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.
Template SS confidence
		547	.	.	550	.	.	.	.	.	.	.	.	.	560													.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.		.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence		G	Y	A	P	V	K	V	D	V	R	I	I	A	A	T	H	Q	N	L	E	Q	R	V	Q	E	G	K	F	R	E	D	L	F	H	R	L	N	V	.	I	R	V	H	L	P	P	L	R	E	R	R	E	D	I	P	R	L	A	R	H	F	L	Q	V	A	A	R	E	L	G	V	E	A	K	L	L	H	P	E	T
Query Conservation																																								.
Alig confidence		.	.	.	.	.													.	.	.	.	.	.	.															.																				.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.													.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	L	P	R	I	V	V	L	A	A	T	N	R	.	.	.	.	.	.	.	P	Q	E	L	D	E	A	A	L	R	R	F	T	K	R	V	Y	V	S	L	P	D	E	Q	T	R	E	L	L	L	N	R	L	L	.	.	.	.	.	.	.	.	.	.	.	Q	K	Q	G	S	P	L	D	T	E	A
Template Known Secondary structure		.	.	.	.	.											S		.	.	.	.	.	.	.	G	G	G	B																															.	.	.	.	.	.	.	.	.	.	.	G	G	G	S			S
Template Predicted Secondary structure		.	.	.	.	.													.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
							613	.	.	.	.	.	.	620	.	.	.	.								.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.												.	660	.	.	.	.	.	.	.	.	.
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.								.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure																													.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.
Query Sequence		E	A	A	L	T	R	L	A	W	P	G	N	V	R	Q	L	E	N	T	C	R	W	L	T	V	M	A	.	.	.	.	.	.	.	A	G	Q	E	V	L	I	Q	D	L	P	G	E	L	F	E	S	T	V	A
Query Conservation																													.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	R	R	L	A	K	I	T	D	G	Y	S	G	S	D	L	T	A	L	A	K	D	A	A	L	E	P	I	R	E	L	N	I	S	A	M	R	A	I	T	E	Q	D	F	H	S	S	L	K	R	I	R	R	S
Template Known Secondary structure									T	T	T														T	T					T																		T	T	S				S
Template Predicted Secondary structure
Template SS confidence
		676	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions