Job Description P0AFB8 Confidence 98.94% Date Thu Jan 5 11:25:50 GMT 2012 Rank 184 Aligned Residues 196 % Identity 19% Template c2zamA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:vacuolar protein sorting-associating protein 4b; PDBTitle: crystal structure of mouse skd1/vps4b apo-form Resolution 3.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160											.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.																																									.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.																																									.
Query Sequence		Q	L	N	G	P	T	T	D	I	I	G	E	A	P	A	M	Q	D	V	F	R	I	I	G	R	L	S	R	S	.	.	.	.	.	.	.	.	.	.	S	I	S	V	L	I	N	G	E	S	G	T	G	K	E	L	V	A	H	A	L	H	R	H	S	P	R	A	K	A	P	F	I	A	L	N	M	A	A	I	.
Query Conservation																															.	.	.	.	.	.	.	.	.	.																																									.
Alig confidence																															.	.	.	.	.	.	.	.	.	.																									.	.	.														.
Template Conservation																																																																	.	.	.
Template Sequence		R	P	N	V	K	W	S	D	V	A	G	L	E	G	A	K	E	A	L	K	E	A	V	I	L	P	I	K	F	P	H	L	F	T	G	K	R	T	P	W	R	G	I	L	L	F	G	P	P	G	T	G	K	S	Y	L	A	K	A	V	A	T	E	.	.	.	A	N	N	S	T	F	F	S	I	S	S	S	D	L
Template Known Secondary structure							G	G	G	S		S												T							G	G	G	S		S	S					S							S	T	T	S													.	.	.	T	T	T									S	T	T
Template Predicted Secondary structure																																																																	.	.	.
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190				.	.	.	.	.	.	.	.	.	200	.	.	.	.
			201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.			.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure		.																																													.	.
Query SS confidence		.																																													.	.
Query Sequence		.	P	K	D	L	I	E	S	E	L	F	G	H	E	K	G	A	F	T	G	A	N	T	I	R	Q	G	R	F	E	Q	A	D	G	G	T	L	F	L	D	E	I	G	D	M	.	.	P	L	D	V	Q	T	R	L	L	R	V	L	A	D	G	Q	F	Y	R	V	G	G	Y	A	P	V	K	V	D	V	R	I	I
Query Conservation		.																																													.	.
Alig confidence		.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.															.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.
Template Sequence		V	S	S	E	K	L	V	K	N	L	F	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	R	E	N	K	P	S	I	I	F	I	D	E	I	D	S	S	E	A	A	R	R	I	K	T	E	F	L	V	Q	M	Q	G	.	.	.	.	.	.	.	.	V	G	V	D	N	D	G	I	L	V	L
Template Known Secondary structure		T				T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T		S							S																				T	.	.	.	.	.	.	.	.	S	S	S			T	T
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.																.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250									.	.	.	.	.	.	.	.	.	260	.
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.		.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure																											.
Query SS confidence																											.
Query Sequence		A	A	T	H	Q	N	L	E	Q	R	V	Q	E	G	K	F	R	E	D	L	F	H	R	L	N	.	V	I	R	V	H	L	P	P	L	R	E	R	R	E	D	I	P	R	L	A	R	H	F	L	Q	V	A	A	R	E	L	G	V	E	A	K	L	L	H	P	E	T	E	A	A	L	T	R	L	A	W	P	G	N
Query Conservation																											.
Alig confidence								.	.	.	.	.	.	.													.															.	.	.	.									.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.																												.	.	.	.									.	.	.	.	.	.	.
Template Sequence		G	A	T	N	I	P	.	.	.	.	.	.	.	W	V	L	D	S	A	I	R	R	R	F	E	K	R	I	Y	I	P	L	P	E	A	H	A	R	A	A	.	.	.	.	M	F	R	L	H	L	G	S	.	.	.	.	.	.	.	T	Q	N	S	L	T	E	A	D	F	Q	E	L	G	R	K	T	D	G	Y	S
Template Known Secondary structure					S			.	.	.	.	.	.	.	T	T	S									S										S						.	.	.	.							T	T	.	.	.	.	.	.	.			B													S			S
Template Predicted Secondary structure								.	.	.	.	.	.	.																												.	.	.	.									.	.	.	.	.	.	.
Template SS confidence
		276	.	.	.	280	.								.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.					.	310	.	.	.	.	.	.								.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	Q	L	E	N	T	C	R	W	L	T	V	M	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	A	D	I	S	I	I	V	R	D	A	L	M	Q	P
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions