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Job DescriptionP0AFB8
Confidence98.88%DateThu Jan 5 11:25:50 GMT 2012
Rank189Aligned Residues218
% Identity19%Templatec2x8aA_
PDB info PDB header:nuclear proteinChain: A: PDB Molecule:nuclear valosin-containing protein-like; PDBTitle: human nuclear valosin containing protein like (nvl), c-2 terminal aaa-atpase domain
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   140.........150.........160 .........170.........180.........190.........200........
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Query Sequence  IIGEAPAMQDVFRIIGRLSRS. . . . . . . . . . . SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESE
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Template Sequence  IGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANE. . . SGLNFISVKGPELLNMYVGES
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   583......590.........600.........610.........620.........630........ .640.........650.........
 
   209210.........220.........230.........240.........250.........260.........270.........280... ..
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Query Sequence  LFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQN. . . LE
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Template Sequence  ERA. . . . . . . . . VRQVFQRAKNSAPCVIFFDEVDALCPSVRVVNQLLTEM. . . . . . . DGLEARQQVFIMAATNRPDIIDP
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   660.. .......670.........680.........690.........700 .........710.........720...
 
   286...290.........300.........310.........320.........330.........340.........350..... ....360....
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Query Sequence  QRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG. NVRQLENTC
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Template Sequence  AILRPGRLDK. . . . . . . TLFVGLPPPADRL. . . . . . . . AILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALV
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   733......740.. .......750..... ....760.........770.........780.........790.......
 
   365....370. ........380.........390.
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Query Sequence  RWLTVMA. . . AGQEVLIQDLPGELFESTVA
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Template Sequence  REASICALRQEMLKVSHKHFEEAFKKVRSS
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B
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   798.800.........810.........820.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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