Job Description P0AFB8 Confidence 98.99% Date Thu Jan 5 11:25:50 GMT 2012 Rank 178 Aligned Residues 265 % Identity 16% Template c2qbyB_ PDB info PDB header:replication/dna Chain: B: PDB Molecule:cell division control protein 6 homolog 3; PDBTitle: crystal structure of a heterodimer of cdc6/orc1 initiators2 bound to origin dna (from s. solfataricus) Resolution 3.35 Å

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		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.			.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.									.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure																													.	.																			.	.	.	.	.	.	.	.																									.
Query SS confidence																													.	.																			.	.	.	.	.	.	.	.																									.
Query Sequence		T	T	D	I	I	G	E	A	P	A	M	Q	D	V	F	R	I	I	G	R	L	S	R	S	S	I	S	.	.	V	L	I	N	G	E	S	G	T	G	K	E	L	V	A	H	A	L	.	.	.	.	.	.	.	.	H	R	H	S	P	R	A	K	A	P	F	I	A	L	N	M	A	A	I	P	K	D	L	I	.
Query Conservation																													.	.																			.	.	.	.	.	.	.	.																									.
Alig confidence																													.	.																			.	.	.	.	.	.	.	.																									.
Template Conservation
Template Sequence		F	K	E	I	P	F	R	E	D	I	L	R	D	A	A	I	A	I	R	Y	F	V	K	N	E	V	K	F	S	N	L	F	L	G	L	T	G	T	G	K	T	F	V	S	K	Y	I	F	N	E	I	E	E	V	K	K	E	D	E	E	Y	K	D	V	K	Q	A	Y	V	N	C	R	E	V	G	G	T	P	Q	A
Template Known Secondary structure			S	S		T	T																	T	T												T	T	S	S																			S	S	S	S	T	T													S
Template Predicted Secondary structure
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
							206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.				.	.	.	.	.	240	.	.	.		.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																														.	.	.										.
Query SS confidence		.	.	.	.	.																														.	.	.										.
Query Sequence		.	.	.	.	.	E	S	E	L	F	G	H	E	K	G	A	F	T	G	A	N	T	I	R	Q	G	R	F	E	Q	A	D	G	G	.	.	.	T	L	F	L	D	E	I	G	D	.	M	P	L	D	V	Q	T	R	L	L	R	V	L	A	D	G	Q	F	Y	R	V	G	G	Y	A	P	V	K	V	D	V	R	I
Query Conservation		.	.	.	.	.																														.	.	.										.
Alig confidence		.	.	.	.	.																														.	.	.										.																.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	L	S	S	L	A	G	K	L	T	G	F	S	V	P	K	H	G	I	N	L	G	E	Y	I	D	K	I	K	N	G	T	R	N	I	R	A	I	I	Y	L	D	E	V	D	T	L	V	K	R	R	G	G	D	I	V	L	Y	Q	L	L	R	.	.	.	.	.	.	.	.	.	.	.	S	D	A	N	I	S	V
Template Known Secondary structure													S				S	S	S	S		T												S	S	S								T	T						S	T	T	S									T	.	.	.	.	.	.	.	.	.	.	.	S	S	S
Template Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170												.	.	.	.	.	.	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.			.	350	.	.	.	.
Predicted Secondary structure																																																																										.	.
Query SS confidence																																																																										.	.
Query Sequence		I	A	A	T	H	Q	N	L	E	Q	R	V	Q	E	G	K	F	R	E	D	L	F	H	R	L	N	V	I	R	V	H	L	P	P	L	R	E	R	R	E	D	I	P	R	L	A	R	H	F	L	Q	V	A	A	R	E	L	G	V	E	A	K	L	L	H	P	E	T	E	A	A	L	.	.	T	R	L	A	W	P
Query Conservation																																																																										.	.
Alig confidence									.	.	.	.																		.							.	.																.	.	.	.	.																.	.
Template Conservation									.	.	.	.																		.							.	.																.	.	.	.	.
Template Sequence		I	M	I	S	N	D	I	.	.	.	.	N	V	R	D	Y	M	E	P	R	V	L	S	S	L	G	P	S	.	V	I	F	K	P	Y	.	.	D	A	E	Q	L	K	F	I	L	S	K	Y	A	E	Y	.	.	.	.	.	G	L	I	K	G	T	Y	D	D	E	I	L	S	Y	I	A	A	I	S	A	K	E	H
Template Known Secondary structure						S	S	T	.	.	.	.	T	T	T	T	T	S							T					.							.	.																.	.	.	.	.	T	S		T	T	S			S												T	T
Template Predicted Secondary structure									.	.	.	.																		.							.	.																.	.	.	.	.
Template SS confidence
		178	.	180	.	.	.	.					.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.		.	.	.	.	.	.			.	.	210	.	.	.	.	.	.	.	.	.	220	.	.						.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.		.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		G	N	V	R	Q	L	E	N	T	C	R	W	L	T	V	M	A	.	A	G	Q	E	V	L	I	Q	D	L	P	G	E	L	F	E	S	T	V	A	E	S	T	S	Q	M	Q	P	D	S	W	A	T	L	L	A	Q	W	A	D	R	A	L	R	S	G	H	Q	N	L	L	S	E	A	Q	P	E	L	E	R	T	L
Query Conservation																			.
Alig confidence																			.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	D	A	R	K	A	V	N	L	L	F	R	A	A	Q	L	A	S	G	G	G	I	I	R	K	E	H	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	K	A	I	V	D	Y	E	Q	E	R
Template Known Secondary structure																		T	T	S	S	S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.																																										.	.	.	.	.	.	280	.	.	.	.
		434	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.						.	.	.	460	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.
Query SS confidence																									.	.	.	.	.
Query Sequence		L	T	T	A	L	R	H	T	Q	G	H	K	Q	E	A	A	R	L	L	G	W	G	R	.	.	.	.	.	N	T	L	T	R	K	L	K	E
Query Conservation																									.	.	.	.	.
Alig confidence																									.	.	.	.	.
Template Conservation
Template Sequence		L	I	E	A	V	K	A	L	P	F	H	Y	K	L	A	L	R	S	L	I	E	S	E	D	V	M	S	A	H	K	M	Y	T	D	L	C	N
Template Known Secondary structure								S	S													T			B
Template Predicted Secondary structure
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions