Return to main results Retrieve Phyre Job Id

Job DescriptionP0AFB8
Confidence95.29%DateThu Jan 5 11:25:50 GMT 2012
Rank244Aligned Residues109
% Identity23%Templatec2iuuE_
PDB info PDB header:membrane proteinChain: E: PDB Molecule:dna translocase ftsk; PDBTitle: p. aeruginosa ftsk motor domain, hexamer
Resolution2.9 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   163......170.........180.........190. ........200.........210.........220.........230...
Predicted Secondary structure 














....
























.....
Query SS confidence 




























. . . .









































. . . . .
Query Sequence  SVLINGESGTGKELVAHALHRHSPRAKAP. . . . FIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADG. . . . .
Query Conservation 



 

 



   
  

  
     
....

 
 
        
  


      
 
     
    
  .....
Alig confidence 




























....








..






























.....
Template Conservation 





 





  
 


 

     
  
 
 




  ..

     



   
 

       
  
  

 

Template Sequence  HLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKML. . ELSIYEGIPHLLCPVVTDMKEAANALRWSVAEMERR
Template Known Secondary structure  S

TTSSTT

TTT
SSSS..GGGGGTT
TTBSSS
B
S
Template Predicted Secondary structure 













..







Template SS confidence 















































































   461........470.........480.........490.........500.. .......510.........520.........530........
 
   234.....240.... .....250........
Predicted Secondary structure  ...................................................



....

Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .










. . . .













Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GTLFLDEIGDM. . . . PLDVQTRLLRVLAD
Query Conservation  ...................................................


 
  
  
....    
  
   
  
Alig confidence  ...................................................










....













Template Conservation    

   

  
  

                                

 






 


       
   
  

  
Template Sequence  YRLMAAMGVRNLAGFNRKVKDAEEAGTPLTDPLFRRESPDDEPPQLSTLPTIVVVVDEFADMMMIVGKKVEELIARIAQK
Template Known Secondary structure  T
SSTT


B
TT


SSSS



B




TT
Template Predicted Secondary structure 
































Template SS confidence 















































































   539540.........550.........560.........570.........580.........590.........600.........610........
 
   259260.........270.........280...
Predicted Secondary structure 
















Query SS confidence 
























Query Sequence  GQFYRVGGYAPVKVDVRIIAATHQN
Query Conservation                  


  
   
Alig confidence  ..........














Template Conservation  ..........


 










Template Sequence  . . . . . . . . . . ARAAGIHLILATQRP
Template Known Secondary structure  ..........
GGGTS

Template Predicted Secondary structure  ..........




Template SS confidence 
























   619620.........630...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions