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Job DescriptionP0AFB8
Confidence93.21%DateThu Jan 5 11:25:50 GMT 2012
Rank294Aligned Residues109
% Identity18%Templatec2iusB_
PDB info PDB header:membrane proteinChain: B: PDB Molecule:dna translocase ftsk; PDBTitle: e. coli ftsk motor domain
Resolution2.7 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   163......170.........180.........190 .........200.........210.........220.........230...
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Query Sequence  SVLINGESGTGKELVAHALHRHSPRAKA. . . . PFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADG. . . . .
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Template Sequence  HLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEG. . IPHLLTEVVTDMKDAANALRWCVNEMERR
Template Known Secondary structure  S

TTSSTT

TTT
TTSSSSGGGTT..
TTBSSS
B
S
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   986...990.........1000.........1010.........1020.........1030.... .....1040.........1050.........1060...
 
   234.....240.... .....250.........260......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GTLFLDEIGDM. . . . PLDVQTRLLRVLADGQFYRVGG
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Template Sequence  YKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQK. . . . . . . .
Template Known Secondary structure  TT
SSTT


B
TT


B





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   1064.....1070.........1080.........1090.........1100.........1110.........1120.........1130.....
 
   267..270.........280...
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Query Sequence  YAPVKVDVRIIAATHQN
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Template Sequence  . . ARAAGIHLVLATQRP
Template Known Secondary structure  ..TS

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   1145....1150.........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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