Job Description P0AFB8 Confidence 99.54% Date Thu Jan 5 11:25:50 GMT 2012 Rank 132 Aligned Residues 207 % Identity 19% Template c2hcbC_ PDB info PDB header:replication Chain: C: PDB Molecule:chromosomal replication initiator protein dnaa; PDBTitle: structure of amppcp-bound dnaa from aquifex aeolicus Resolution 3.51 Å

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		131	.	.	.	.	.	.	.	.		140	.	.			.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure											.				.	.
Query SS confidence											.				.	.
Query Sequence		V	Q	L	N	G	P	T	T	D	.	I	I	G	.	.	E	A	P	A	M	Q	D	V	F	R	I	I	G	R	L	S	R	S	S	I	S	V	L	I	N	G	E	S	G	T	G	K	E	L	V	A	H	A	L	H	R	H	S	P	R	A	K	A	P	F	I	A	L	N	M	A	A	I	P	K	D	L	I	E	S
Query Conservation											.				.	.
Alig confidence											.				.	.																																																										.	.	.	.	.
Template Conservation																																																																										.	.	.	.	.
Template Sequence		L	N	P	K	Y	T	L	E	N	F	I	V	G	E	G	N	R	L	A	Y	E	V	V	K	E	A	L	E	N	L	G	S	L	Y	N	P	I	F	I	Y	G	S	V	G	T	G	K	T	H	L	L	Q	A	A	G	N	E	A	K	K	R	G	Y	R	V	I	Y	S	S	A	D	D	.	.	.	.	.	F	A	Q
Template Known Secondary structure				T	T			S	S	S	S				T	T	T										T	T	T	T	T	T	T	S									S	S	S	S	S															T	T											.	.	.	.	.
Template Predicted Secondary structure																																																																										.	.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150						.	.	.
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	F	G	H	E	K	G	A	F	T	G	A	N	T	I	R	Q	G	R	F	E	Q	A	D	G	G	T	L	F	L	D	E	I	G	D	M	P	L	D	V	Q	T	R	L	L	R	V	L	A	D	G	Q	F	Y	R	V	G	G	Y	A	P	V	K	V	D	V	R	I	I	A	A	T	H	Q	N	L	E	Q	R
Query Conservation
Alig confidence																					.	.	.	.	.																												.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.																												.	.	.	.	.	.	.	.
Template Sequence		A	M	V	E	H	L	K	K	G	T	I	N	E	F	R	N	M	Y	K	.	.	.	.	.	S	V	D	L	L	L	L	D	D	V	Q	F	L	S	G	K	E	R	T	Q	I	E	F	F	H	I	F	.	.	.	.	.	.	.	.	N	T	L	Y	L	L	E	K	Q	I	I	L	A	S	D	R	H	P	Q	K	L
Template Known Secondary structure										T											.	.	.	.	.	T		S							G	G	G	G	T	T		S											.	.	.	.	.	.	.	.						T	T								S	S		G	G	G
Template Predicted Secondary structure																					.	.	.	.	.																												.	.	.	.	.	.	.	.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.						.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.									200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.			.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure																							.	.
Query SS confidence																							.	.
Query Sequence		V	Q	E	G	K	F	R	E	D	L	F	H	R	L	N	V	I	R	V	H	L	.	.	P	P	L	R	E	R	R	E	D	I	P	R	L	A	R	H	F	L	Q	V	A	A	R	E	L	G	V	E	A	K	L	L	H	P	E	T	E	A	A	L	T	R	L	A	W	P	G	N	V	R	Q	L	E	N	T	C	R
Query Conservation																							.	.
Alig confidence		.	.	.																			.	.							.	.	.	.	.	.	.	.															.	.	.													.	.
Template Conservation		.	.	.																											.	.	.	.	.	.	.	.															.	.	.													.	.
Template Sequence		.	.	.	D	G	V	S	D	R	L	V	S	R	F	E	G	G	I	L	V	E	I	E	L	D	N	K	T	R	.	.	.	.	.	.	.	.	F	K	I	I	K	E	K	L	K	E	F	N	L	E	.	.	.	L	R	K	E	V	I	D	Y	L	L	E	N	.	.	T	K	N	V	R	E	I	E	G	K	I	K
Template Known Secondary structure		.	.	.	T	T	S											S									S				.	.	.	.	.	.	.	.											T	T			.	.	.													.	.			S
Template Predicted Secondary structure		.	.	.																											.	.	.	.	.	.	.	.															.	.	.													.	.
Template SS confidence
					221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.									.	.	.	250	.	.	.	.	.	.	.	.	.	260				.	.	.	.	.	.	.	.	.	270	.	.			.	.	.	.	.	.	.	280	.	.	.	.
		366	.	.	.	370	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	L	T	V	M	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	I	K	L	K	G
Template Known Secondary structure				T	T	S
Template Predicted Secondary structure
Template SS confidence
		285	.	.	.	.	290

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions