Job Description P0AFB8 Confidence 98.77% Date Thu Jan 5 11:25:50 GMT 2012 Rank 198 Aligned Residues 200 % Identity 21% Template c2chvE_ PDB info PDB header:dna-binding protein Chain: E: PDB Molecule:replication factor c small subunit; PDBTitle: replication factor c adpnp complex Resolution 4.00 Å

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		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.			.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure																																																						.	.
Query SS confidence																																																						.	.
Query Sequence		L	N	G	P	T	T	D	I	I	G	E	A	P	A	M	Q	D	V	F	R	I	I	G	R	L	S	R	S	S	I	S	V	L	I	N	G	E	S	G	T	G	K	E	L	V	A	H	A	L	H	R	H	.	.	S	P	R	A	K	A	P	F	I	A	L	N	M	A	A	I	P	K	D	L	I	E	S	E	L	F
Query Conservation																																																						.	.
Alig confidence																										.	.																											.	.
Template Conservation																										.	.
Template Sequence		R	P	R	T	L	D	E	V	V	G	Q	D	E	V	I	Q	R	L	K	G	Y	V	E	R	.	.	K	N	I	P	H	L	L	F	S	G	P	P	G	T	G	K	T	A	T	A	I	A	L	A	R	D	L	F	G	E	N	W	R	D	N	F	I	E	M	N	A	S	D	E	R	G	I	D	V	V	R	H	K	I
Template Known Secondary structure				S	S	G	G	G			S									G	G	G	T	T	T	.	.	T											T	T	S	S														T	T			T	T	T						T	T	S	T	T	S	T	T	T	S	S
Template Predicted Secondary structure																										.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.			.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure
Query SS confidence
Query Sequence		G	H	E	K	G	A	F	T	G	A	N	T	I	R	Q	G	R	F	E	Q	A	D	G	G	T	L	F	L	D	E	I	G	D	M	P	L	D	V	Q	T	R	L	L	R	V	L	A	D	G	Q	F	Y	R	V	G	G	Y	A	P	V	K	V	D	V	R	I	I	A	A	T	H	Q	N	L	E	Q	R	V	Q	E
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.
Template Sequence		K	.	.	.	.	.	.	.	.	.	E	F	A	R	T	A	P	I	G	G	A	P	F	K	I	I	F	L	D	E	A	D	A	L	T	A	D	A	Q	A	A	L	R	R	T	M	E	M	.	.	.	.	.	.	.	.	.	.	.	Y	S	K	S	C	R	F	I	L	S	C	N	Y	V	.	.	.	.	.	.	.
Template Known Secondary structure			.	.	.	.	.	.	.	.	.					S			T	T	T										T	G	G	G	S							T	T	G	G	G	T	S	S	.	.	.	.	.	.	.	.	.	.	.	S	S	S	S								S		G	.	.	.	.	.	.	.
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.
Template SS confidence
		90										.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.												.	130	.	.	.	.	.	.	.	.	.	140	.	.
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	F	R	E	D	L	F	H	R	L	N	V	I	R	V	H	L	P	P	L	R	E	R	R	E	D	I	P	R	L	A	R	H	F	L	Q	V	A	A	R	E	L	G	V	E	A	K	L	L	H	P	E	T	E	A	A	L	T	R	L	A	W	P	G	N	V	R	Q	L	E	N	T	C	R	W	L	T	V	M
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.																						.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.																						.
Template Sequence		S	R	I	I	E	P	I	Q	S	R	C	A	V	F	R	F	K	P	V	P	K	E	A	M	K	K	R	L	L	E	I	.	.	.	.	.	.	.	.	.	.	.	C	E	K	E	G	V	K	I	T	E	D	G	L	E	A	L	I	Y	I	S	G	.	G	D	F	R	K	A	I	N	A	L	Q	G	A	A	A	I
Template Known Secondary structure		G	G	S						T	T																						.	.	.	.	.	.	.	.	.	.	.			T	T	T			B													T	.	T														S	S
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.																						.
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.												.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		371	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	E	V
Template Known Secondary structure		S	S
Template Predicted Secondary structure
Template SS confidence
		211	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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