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Job DescriptionP0AFB8
Confidence100.00%DateThu Jan 5 11:25:50 GMT 2012
Rank3Aligned Residues242
% Identity43%Templatec2c99A_
PDB info PDB header:transcription regulationChain: A: PDB Molecule:psp operon transcriptional activator; PDBTitle: structural basis of the nucleotide driven conformational2 changes in the aaa domain of transcription activator pspf
Resolution1.9 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   140.........150.........160.........170.........180.........190.........200.........210.........
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Query Sequence  IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTG
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Template Sequence  LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAKRHPG
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TTS
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B

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   8.10.........20.........30.........40.........50.........60.........70.........80.......
 
   220.........230.........240.........250.........260.........270.........280.........290.........
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Query Sequence  ANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH
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Template Sequence  . . . . . . . RFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD
Template Known Secondary structure  .......TTTSSGGGS
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   95....100.........110.........120.........130.........140.........150.........160.......
 
   300.........310.........320.........330........ .340.........350.........360.........370........
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Query Sequence  RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAK. LLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLI
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Template Sequence  RLAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL
Template Known Secondary structure 
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GGGSTT
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B
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   168.170.........180.........190.........200.........210.........220.........230.........240.......
 
   379380........
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Query Sequence  QDLPGELFES
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Template Sequence  DDIIIDPFKR
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TTT
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   248.250.......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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