Job Description P0AFB8 Confidence 88.17% Date Thu Jan 5 11:25:50 GMT 2012 Rank 452 Aligned Residues 180 % Identity 11% Template c1q57G_ PDB info PDB header:transferase Chain: G: PDB Molecule:dna primase/helicase; PDBTitle: the crystal structure of the bifunctional primase-helicase of2 bacteriophage t7 Resolution 3.45 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.							.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure																																																													.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.
Query Sequence		T	C	T	T	F	E	N	G	A	E	V	L	E	A	L	A	S	K	T	P	D	V	L	L	S	D	I	R	M	P	G	M	D	G	L	A	L	L	K	Q	I	K	Q	R	H	P	M	L	P	V	I	I	M	T	A	H	S	D	L	.	.	.	.	.	.	D	A	A	V	S	A	Y	Q	Q	G	A	F	D	Y	L
Query Conservation																																																													.	.	.	.	.	.
Alig confidence																																																													.	.	.	.	.	.
Template Conservation
Template Sequence		K	I	V	V	T	E	G	E	I	D	M	L	T	V	M	E	L	Q	D	C	K	Y	P	V	V	S	L	G	H	G	A	S	A	A	K	K	T	C	A	A	N	Y	E	Y	F	D	Q	F	E	Q	I	I	L	M	F	D	M	D	E	A	G	R	K	A	V	E	E	A	A	Q	V	L	P	A	G	K	V	R	V	A
Template Known Secondary structure							S	S											T	T	T		S						S	S	T	T	T	T							T	T						T										S	S														S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		103	.	.	.		.	.	.	110	.	.	.	.						.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.											.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure						.									.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.
Query SS confidence						.									.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.
Query Sequence		P	K	P	F	.	D	I	D	E	A	V	A	L	.	.	.	.	.	V	E	R	A	I	S	H	Y	Q	E	Q	Q	Q	P	R	N	V	Q	L	N	G	P	T	T	D	I	I	.	.	.	.	.	.	.	.	.	.	G	E	A	P	A	M	Q	D	V	F	R	I	I	G	R	L	S	R	S	S	I	S	V	L	I
Query Conservation						.									.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.
Alig confidence						.									.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.														.
Template Conservation																																																																						.
Template Sequence		V	L	P	C	K	D	A	N	E	C	H	L	N	G	H	D	R	E	I	M	E	Q	V	W	N	A	G	P	W	I	P	D	G	V	V	S	A	L	S	L	R	E	R	I	R	E	H	L	S	S	E	E	S	V	G	L	L	F	S	G	C	T	G	I	N	D	K	T	.	L	G	A	R	G	G	E	V	I	M	V
Template Known Secondary structure				S	S	S	S						S	S	S										S	S			B				S	S				G	G	G	G											S		T	T		S			S	S		T	T						.					T	T
Template Predicted Secondary structure																																																																						.
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.		300	.	.	.	.	.	.	.	.	.	310
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	E	S	G	T	G	K	E	L	V	A	H	A	L	H	R	H	S	P	R	A	K	A	P	F	I	A	L	N	M	A	A	I	P	K	D	L	I	E	S	E	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	S	G	S	G	M	V	M	S	T	F	V	R	Q	Q	A	L	Q	W	G	T	A	M	G	K	K	V	G	L	A	M	L	E	E	S	V	E	E	T	A	E	D	L
Template Known Secondary structure				S	S		S														T	T	T	S									T	T	S
Template Predicted Secondary structure
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions