Job Description P0AFB8 Confidence 98.37% Date Thu Jan 5 11:25:50 GMT 2012 Rank 208 Aligned Residues 173 % Identity 16% Template c1jr3E_ PDB info PDB header:transferase Chain: E: PDB Molecule:dna polymerase iii, delta' subunit; PDBTitle: crystal structure of the processivity clamp loader gamma2 complex of e. coli dna polymerase iii Resolution 2.70 Å

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		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.				.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.																						.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Query SS confidence																				.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Query Sequence		P	A	M	Q	D	V	F	R	I	I	G	R	L	S	R	S	S	I	.	.	.	S	V	L	I	N	G	E	S	G	T	G	K	E	L	V	A	H	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	R	H	S	P	R	A	K	A	P	F	I	A	L	N	M	.	.	.
Query Conservation																				.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Alig confidence																				.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Template Conservation
Template Sequence		P	W	L	R	P	D	F	E	K	L	V	A	S	Y	Q	A	G	R	G	H	H	A	L	L	I	Q	A	L	P	G	M	G	D	D	A	L	I	Y	A	L	S	R	Y	L	L	C	Q	Q	P	Q	G	H	K	S	C	G	H	C	R	G	C	Q	L	M	Q	A	G	T	H	P	D	Y	Y	T	L	A	P	E	K	G
Template Known Secondary structure		T	T										T	T	T	T	T	S				S								T	T	S	S													T		S	S			S	S	S			S		S								T	S			S	S								T	T
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
			198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	A	A	I	P	K	D	L	I	E	S	E	L	F	G	H	E	K	G	A	F	T	G	A	N	T	I	R	Q	G	R	F	E	Q	A	D	G	G	T	L	F	L	D	E	I	G	D	M	P	L	D	V	Q	T	R	L	L	R	V	L	A	D	G	Q	F	Y	R	V	G	G	Y	A	P	V	K	V	D	V	R	I
Query Conservation		.
Alig confidence		.																										.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	N	T	L	G	V	D	A	V	R	E	V	T	E	K	L	N	E	H	A	R	L	G	G	A	K	.	.	.	.	.	.	.	.	.	.	.	.	V	V	W	V	T	D	A	A	L	L	T	D	A	A	A	N	A	L	L	K	T	L	E	E	.	.	.	.	.	.	.	.	.	.	.	P	P	A	E	T	W	F
Template Known Secondary structure		S	S	S	B													S	S			T	T	S	S			.	.	.	.	.	.	.	.	.	.	.	.					S		G	G	G	B														S	.	.	.	.	.	.	.	.	.	.	.			T	T
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110													.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.												.	.	.	.	.	140	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	A	T	H	Q	N	L	E	Q	R	V	Q	E	G	K	F	R	E	D	L	F	H	R	L	N	V	I	R	V	H	L	P	P	L	R	E	R	R	E	D	I	P	R	L	A	R	H	F	L	Q	V	A	A	R	E	L	G	V	E	A	K	L	L	H	P	E	T	E	A	A	L	T	R	L	A	W	P	G	N
Query Conservation
Alig confidence									.	.	.	.	.	.	.											.	.										.	.	.	.	.														.	.	.	.	.	.	.	.	.																.
Template Conservation									.	.	.	.	.	.	.											.	.										.	.	.	.	.														.	.	.	.	.	.	.	.	.																.
Template Sequence		F	L	A	T	R	E	P	.	.	.	.	.	.	.	E	R	L	L	A	T	L	R	S	R	.	.	C	R	L	H	Y	L	A	P	P	.	.	.	.	.	P	E	Q	Y	A	V	T	W	L	S	R	E	V	.	.	.	.	.	.	.	.	.	T	M	S	Q	D	A	L	L	A	A	L	R	L	S	A	.	G	S
Template Known Secondary structure						S		S	.	.	.	.	.	.	.	T	T	S		T	T	T	T	T	T	.	.	S									.	.	.	.	.													S	.	.	.	.	.	.	.	.	.													T	T	T	.	T
Template Predicted Secondary structure									.	.	.	.	.	.	.											.	.										.	.	.	.	.														.	.	.	.	.	.	.	.	.																.
Template SS confidence
		142	.	.	.	.	.	.								.	150	.	.	.	.	.	.	.	.			.	160	.	.	.	.	.	.	.						.	.	170	.	.	.	.	.	.	.	.	.	180										.	.	.	.	.	.	.	.	.	190	.	.	.	.	.		.	.
		357	.	.	360	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	Q	L	E	N	T	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	G	A	A	L	A	L	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		198	.	200	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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