Job Description P0AFB8 Confidence 89.40% Date Thu Jan 5 11:25:50 GMT 2012 Rank 424 Aligned Residues 113 % Identity 17% Template c1a1vA_ PDB info PDB header:hydrolase/dna Chain: A: PDB Molecule:protein (ns3 protein); PDBTitle: hepatitis c virus ns3 helicase domain complexed with single2 stranded sdna Resolution 2.20 Å

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		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.			.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure																																																				.	.																				.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.																				.	.	.	.	.	.	.	.	.
Query Sequence		L	S	R	S	S	I	S	V	L	I	N	G	E	S	G	T	G	K	E	L	V	A	H	A	L	H	R	H	S	P	R	A	K	A	P	F	I	A	L	N	M	A	A	I	P	K	D	L	I	E	.	.	S	E	L	F	G	H	E	K	G	A	F	T	G	A	N	T	I	R	Q	.	.	.	.	.	.	.	.	.
Query Conservation																																																				.	.																				.	.	.	.	.	.	.	.	.
Alig confidence																					.	.																														.	.																				.	.	.	.	.	.	.	.	.
Template Conservation																					.	.
Template Sequence		V	P	Q	S	F	Q	V	A	H	L	H	A	P	T	G	S	G	K	S	.	.	T	K	V	P	A	A	Y	A	A	Q	G	Y	K	V	L	V	L	N	P	S	V	A	A	T	L	G	F	G	A	Y	M	S	K	A	H	G	V	D	P	N	I	R	T	G	V	R	T	I	T	T	G	S	P	I	T	Y	S	T	Y
Template Known Secondary structure				S	S										T	T	S		T	T	.	.	T								T	T	T								S																	S								S	S								S
Template Predicted Secondary structure																					.	.
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.			.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
							226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	G	R	F	E	Q	A	D	G	G	T	L	F	L	D	E	I	G	D	M	P	L	D	V	Q	T	R	L	L	R	V	L	A	D	G	Q	F	Y	R	V	G	G	Y	A	P	V	K	V	D	V	R	I	I	A	A	T
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.																																		.	.	.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.	.	.
Template Sequence		G	K	F	L	A	D	G	G	S	G	G	A	Y	D	I	I	I	C	D	E	C	H	S	T	D	A	T	S	I	L	G	I	G	T	V	L	D	Q	.	.	.	.	.	.	.	.	.	A	E	T	A	G	A	R	L	V	V	L	A	T
Template Known Secondary structure							T	T							S						T	T	T			S														.	.	.	.	.	.	.	.	.	T	T	T	T	T		S
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.										.	310	.	.	.	.	.	.	.	.	.	320	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions