Job Description P0A8Y8 Confidence 99.85% Date Thu Jan 5 11:09:00 GMT 2012 Rank 30 Aligned Residues 123 % Identity 7% Template c3bnvD_ PDB info PDB header:unknown function Chain: D: PDB Molecule:cj0977; PDBTitle: crystal structure of cj0977, a sigma28-regulated virulence protein2 from campylobacter jejuni. Resolution 2.60 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		8	.	10	.	.	.	.	.	.	.	.						.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure													.	.	.	.	.																												.
Query SS confidence													.	.	.	.	.																												.
Query Sequence		T	L	D	E	L	N	A	T	S	D	N	.	.	.	.	.	T	M	V	A	H	L	G	I	V	Y	T	R	L	G	D	D	V	L	E	A	E	M	P	V	D	T	R	.	T	H	Q	P	F	G	L	L	H	G	G	A	S	A	A	L	A	E	T	L	G	S	M	A	G	F	M	M	T	R	D	G	Q	C	V	V
Query Conservation													.	.	.	.	.																												.
Alig confidence													.	.	.	.	.																												.																										.	.	.	.	.
Template Conservation																																																																							.	.	.	.	.
Template Sequence		S	A	E	D	I	S	R	V	R	A	E	L	L	T	C	P	E	L	N	T	S	L	A	G	T	I	I	E	I	D	K	N	Y	A	K	S	I	L	I	T	T	S	E	X	V	A	D	D	Q	G	L	I	F	D	A	F	I	F	A	A	A	N	Y	V	A	Q	A	S	I	.	.	.	.	.	N	K	E	F	S	V
Template Known Secondary structure															S		T	T														T	T										G	G	G	B	S	S	T	T		B	B		T																.	.	.	.	.			S	S
Template Predicted Secondary structure																																																																							.	.	.	.	.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.						.	.	.	90	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.	.	.		.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure															.															.
Query SS confidence															.															.
Query Sequence		G	T	E	L	N	A	T	H	H	R	P	V	S	.	E	G	K	V	R	G	V	C	Q	P	L	H	L	G	.	R	Q	N	Q	S	W	E	I	V	V	F	D	E	Q	G	R	R	C	C	T	C	R	L	G	T	A	V	L
Query Conservation															.															.
Alig confidence															.															.															.
Template Conservation																																													.
Template Sequence		I	I	G	S	K	C	F	F	Y	A	P	L	K	L	G	D	V	L	E	L	E	A	H	A	L	F	D	E	T	S	K	K	R	D	V	K	V	V	G	H	V	K	E	.	I	K	X	F	E	G	T	I	Q	V	V	S	T
Template Known Secondary structure											S			B	T	T													S	S		S											T	T	.
Template Predicted Secondary structure																																													.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.		.	.	.	.	140	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions