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Job DescriptionP77783
Confidence100.00%DateThu Jan 5 12:32:48 GMT 2012
Rank24Aligned Residues543
% Identity25%Templated2iv2x2
SCOP infoFormate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3
Resolution2.27

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   53......60.........70.........80.........90.........100.........110... ......120........
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Query Sequence  KAVWSSCTVNCGSRCLLRLHVKDDTVYWVESDTTGDDVYGNHQVRACLRGRSIRRRMNHPD. . . . RLKYPMKRVGKRGEG
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Template Sequence  KKVVTVCPY. CASGCKINLVVDNGKIVRAEAAQ. . . . . GKTNQGTLCLKGYYGWDFINDTQILTPRLKTPMIRR. . QRGG
Template Known Secondary structure 
SS.BTT

TT

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TTTTT


TTGGGG


SSS
B

S


..STTS
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   2.......10 .........20.........30... ......40.........50.........60......... 70...
 
   129130.........140.........150.........160.........170.........180.........190 .........200.......
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Query Sequence  KFERISWDEALDTISDNLRRILKDYGNEAVHVLYGTGVDGGNITNSNVPYRLMNSCGGFLSR. YGSYSTAQISAAMSYMF
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Template Sequence  KLEPVSWDEALNYVAERLSAIKEKYGPDAIQTTGSSR. . GTGNETNYVMQKFARAVIGTNNVDCCARVHGPSVAGLHQSV
Template Known Secondary structure 




GGG

SS..TT
TT




SS



SSS
S
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   74.....80.........90.........100.........110 .........120.........130.........140.........150.
 
   208.210 .........220.........230.........240.........250.........260.........270.........280......
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Query Sequence  GAN. DGNSPDDIANTKLVVMFGNNPAETRMSGGGVTYYVEQARERSNARMIVIDPRYNDTAAGREDEWLPIRPGTDGALA
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Template Sequence  GNGAMSNAINEIDNTDLVFVFGYNPADSHPIV. . . ANHVINAKRN. GAKIIVCDPRKIETAR. IADMHIALKNGSNIALL
Template Known Secondary structure  S

S
SS
GGGGGG
SS


...T.T

SS

.T
S


TT
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   153......160.........170.........180.... .....190.... .....200.........210 .........220.......
 
   287..290.........300.........310.........320.........330.........340.........350.........360......
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Query Sequence  CAIAWVLITENMVDQPFLDKYCVGYDEKTLPANAPRNAHYKAYILGEGPDGIAKTPEWAAKITSIPAEKIIQLAREIGSA
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Template Sequence  NAMGHVIIEENLYDKAFVASRTEGFEEYRKIVE. . . . . . . . . . . . . . . . . . . GYTPESVEDITGVSASEIRQAARMYAQA
Template Known Secondary structure  TT
S

...................T

SGGG


S
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   228.230.........240.........250.........260 .........270.........280........
 
   367..370.........380.........390.........400.........410.........420.........430. ......
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Query Sequence  KPAYICQGWGPQRHSNGEQTSRAIAMLSVLTGNVGINGGNSGVREGSWDLGVEWFPMLENPVKTQ. . . . . . . . . ISVFTW
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Template Conservation      
  
 
      
     
   
  
 
 

  
 
           
                            
Template Sequence  KSAAILWGMGVTQFYQGVETVRSLTSLAMLTGNLGKPHAGVNPVRGQNNVQGACDMGALPDTYPGYQYVKDPANREKFAK
Template Known Secondary structure  SSTTGGGSSSTT
SSSTT
S
SBTTTT
BTTGGGTT
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   289290.........300.........310.........320.........330.........340.........350.........360........
 
   438.440.........450.........460.........470.........480.........490.........500.........510.......
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Query Sequence  TDAIDHGTEMTATRDGVRGKEKLDVPIKFLWCYASNTLINQHGDINHTHEVLQDDSKCEMIVGIDHFMTASAKYCDILLP
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Template Sequence  AWGVESLPAHTGYRISELPHRAAHGEVRAAYIMGEDPLQTDA. . . . ELSAVRKAFEDLELVIVQDIFMTKTASAADVILP
Template Known Secondary structure  TT
S



S



GGGTTS

S

SS....SSSSB

T
S
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   369370.........380.........390.........400.........410 .........420.........430.........440....
 
   518.520.........530.........540.........550.........560.........570.........580.........590.......
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Query Sequence  DLMPTEQEDLISHESAGNMGYVILAQPATSAKFERKPIYWMLSEVAKRLGPDVYQTFTEGRSQHEWIKYLHAKTKERNPE
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Template Sequence  STSWGEHEGVFTAADRG. . . . FQRFFKAVEPKWDLKTDWQIISEIATRMGYPMHYN. . . . . NTQEIWDELRH. . LCPDFY
Template Known Secondary structure  B

BTTB

TTS....


S

SSS
B
TT




S.....S..
TTTT
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   445....450.........460. ........470.........480.........490...... ...500....... ..510...
 
   598.600.........610.........620.........630.........640......
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Query Sequence  MPDYEEMKTTGIFKKKCPEEHYVAFRAFREDPQANPLKTPSGKIEIYSE
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Template Sequence  GATYEKMGELGFIQWPC. . RDTSDADQGTSYLFKEKFDTPNGLAQFFTC
Template Known Secondary structure  T

TTT

S

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SSTT

B
SSS
SS

SSTTS




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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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