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Job DescriptionP77783
Confidence100.00%DateThu Jan 5 12:32:48 GMT 2012
Rank18Aligned Residues602
% Identity28%Templated1y5ia2
SCOP infoFormate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3
Resolution1.90

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   52.......60.........70.........80.........90.... .....100.........110.........120.
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Query Sequence  EKAVWSSCTVNCGSRCLLRLHVKDDTVYWVESDTTGDDVYGNH. . . QVRACLRGRSIRRRMNHPDRLKYPMKR. . . . . . .
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Template Sequence  DKIVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRTRPDLPNHEPRGCPRGASYSWYLYSANRLKYPMMRKRLMKMW
Template Known Secondary structure  S


SSSS



TT


S



TTS


TT


TGGGGGTSTTB

S
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   42.......50.........60.........70.........80.........90.........100.........110.........120.
 
   122.......130.........140.........150.........160.........170....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . VGKRGEGKFERISWDEALDTISDNLRRILKDYGNEAVHVLYGTGVDGGNITNS
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Template Sequence  REAKALHSDPVEAWASIIEDADKAKSFKQARGRGGFVRSSWQEVNELIAASNVYTIKNYGPDRVAGFSPIP. . AMSMVSY
Template Known Secondary structure  TT
SST
TTTTSS


T
GGG


G..GGS
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   122.......130.........140.........150.........160.........170.........180.........190.. .......
 
   175....180.........190.........200.........210 .........220.........230.........240.........250...
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Query Sequence  NVPYRLMNSCGGFLSRYGSYSTAQISAAMSYMFGAN. DGNSPDDIANTKLVVMFGNNPAETRMSGGGVTYYVEQARERSN
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Template Sequence  ASGARYLSLIGGTCLSFYD. WYCDLPPASPQTWGEQTDVPESADWYNSSYIIAWGSNVPQTRTPD. . . AHFFTEVRYK. G
Template Known Secondary structure  T


TT.TTT
S
TS
S




TT
SS

SGGG...GGG.T
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   200.........210........ .220.........230.........240.........250.........260... ......270... .
 
   254.....260.........270.........280.........290.........300. ........310
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Query Sequence  ARMIVIDPRYNDTAAGREDEWLPIRPGTDGALACAIAWVLITENMVDQ. . . . . . PFLDKYCVG. . . . . . . . . . . . . . . . .
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Template Sequence  TKTVAVTPDYAEIAK. LCDLWLAPKQGTDAAMALAMGHVMLREFHLDNPSQYFTDYVRRYTDMPMLVMLEERDGYYAAGR
Template Known Secondary structure 

SS

.TSS


TT
TTTS

BSTTB
SSS
Template Predicted Secondary structure 





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   275....280......... 290.........300.........310.........320.........330.........340.........350...
 
  
Predicted Secondary structure  ................................................................................
Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation   

 

               

 
  
    
 
  
        
                                 
Template Sequence  MLRAADLVDALGQENNPEWKTVAFNTNGEMVAPNGSIGFRWGEKGKWNLEQRDGKTGEETELQLSLLGSQDEIAEVGFPY
Template Known Secondary structure 
BGGGBTTGGG

SSGGG
B
BTTS

BTTSGGGTSSS
S

S
SSBBTTT

B

B



TTS
S
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   354.....360.........370.........380.........390.........400.........410.........420.........430...
 
   311........320.........330...... ...340.........350.
Predicted Secondary structure  .....................








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Query Sequence  . . . . . . . . . . . . . . . . . . . . . YDEKTLPANAPRNAHYKAYILGEGPD. . . . . . . . . . . . . . . . . . GIAKTPEWAAKITSI
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Template Sequence  FGGDGTEHFNKVELENVLLHKLPVKRLQLADGSTALVTTVYDLTLANYGLERGLNDVNCATSYDDVKAYTPAWAEQITGV
Template Known Secondary structure 
TT


TTS





SBTTS
TTB

SS

TTSBSSTTS

TT


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   434.....440.........450.........460.........470.........480.........490.........500.........510...
 
   352.......360.... .....370.........380.........390.........400.........410........
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Query Sequence  PAEKIIQLAREIG. . . . . SAKPAYICQGWGPQRHSNGEQTSRAIAMLSVLTGNVGINGGNSGVREGSWDLGV. . . . . . . .
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Template Sequence  SRSQIIRIAREFADNADKTHGRSMIIVGAGLNHWYHLDMNYRGLINMLIFCGCVGQSGGGWAHYVGQEKLRPQTGWQPLA
Template Known Secondary structure 
TS

TSTTTT
TTSTT

SS



SS
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   514.....520.........530.........540.........550.........560.........570.........580.........590...
 
   419420.........430.........440.........450.
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . EWFPMLENPVKTQISVFTWTDAIDHGTEMTATR. . . . . . . . . . . . .
Query Conservation  ..................................                                 .............
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Template Conservation   
 
         
                       
                     

 
  
              
Template Sequence  FALDWQRPARHMNSTSYFYNHSSQWRYETVTAEELLSPMADKSRYTGHLIDFNVRAERMGWLPSAPQLGTNPLTIAGEAE
Template Known Secondary structure  TTTT
S


TTGGGG



SGGGS
TTS
GGGS
S
TTSS

SS
BSS
TTS
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   594.....600.........610.........620.........630.........640.........650.........660.........670...
 
   452.......460.........470.........480.........
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Query Sequence  . . . . . . . . . . . . . . . . . . . . DGVRGKEKLDVPIKFLWCYASNTLINQHGDINHTHEVL. . . . . . . . . . . . . . . . . . . . . .
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Template Conservation                                   
  

   
 
 
   
  
 

       
                
Template Sequence  KAGMNPVDYTVKSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGSSGKGHEFMLKYLLGTEHGIQGKDLGQQGGVKPEE
Template Known Secondary structure  TTS
TSS
BGGG
TTSSSSS

S

TTTTT
SSTT
S




S

TTTTT



SS
Template Predicted Secondary structure 






































































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   674.....680.........690.........700.........710.........720.........730.........740.........750...
 
   490.........500.........510.........520.........530.........540.........550.........560...
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Query Sequence  . . . . . . QDDSKCEMIVGIDHFMTASAKYCDILLPDLMPTEQEDLISHESAGNMGYVILAQPATSAKFERKPIYWMLSEVA
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Template Sequence  VDWQDNGLEGKLDLVVTLDFRLSSTCLYSDIILPTATWYEKDDMNTSD. . . MHPFIHPLSAAVDPAWEAKSDWEIYKAIA
Template Known Secondary structure  S


SS





SSB

T
SB

TTSS


S...SSS

SS

STT
B
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   754.....760.........770.........780.........790.........800. ........810.........820.........830
 
   564.....570...
Predicted Secondary structure 






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Query Sequence  KRLGPDVYQT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation    

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Template Sequence  KKFSEVCVGHLGKETDIVTLPIQHDSAAELAQPLDVKDWKKGECDLIPGKTAPHIMVVERDYPATYERFTSIGPLMEKIG
Template Known Secondary structure  TTTT




TTSGGG


SSS


GGGTSS


BTTTB
GGGTB

TT
Template Predicted Secondary structure 












































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   831........840.........850.........860.........870.........880.........890.........900.........910
 
   574.....580.........590.........600......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . FTEGRSQHEWIKYLHAKTKERNPEMPDYEEMKT
Query Conservation  ...............................................                              
  
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Template Conservation                  
                            
                      
     
     
Template Sequence  NGGKGIAWNTQSEMDLLRKLNYTKAEGPAKGQPMLNTAIDAAEMILTLAPETNGQVAVKAWAALSEFTGRDHTHLALNKE
Template Known Secondary structure  TT


B

SSTTTTSBB

S
TTTBSS

GGGTGGGT
Template Predicted Secondary structure 
















































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   911........920.........930.........940.........950.........960.........970.........980.........990
 
   607..610...... ...620.........630.........640.... .....650.........660.......
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Query Sequence  TGIFKKKCPE. . . . . . . . . . . . . . . . . EHYVAFRAFREDPQANPLKTPSGKIEIY. . SERLAKIADTWELKKDEIIHPLP
Query Conservation   
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Template Conservation                     
           
           

 
 


  

 

      

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Template Sequence  DEKIRFRDIQAQPRKIISSPTWSGLEDEHVSYNAGYTNVHELIPWRTLSGRQQLYQDHQWMRDFGE. . . . . . . . . . . SLL
Template Known Secondary structure  T
B

S




TTSSS


SSS


TT



SSTTSSB




STT
...........SS
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   991........1000.........1010.........1020.........1030.........1040.........1050...... ...
 
   668.670.....
Predicted Secondary structure 







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Query Sequence  AYTPGFDG
Query Conservation          
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Template Conservation          
Template Sequence  VYRPPIDT
Template Known Secondary structure 







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   1060.......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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