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Job DescriptionP77783
Confidence100.00%DateThu Jan 5 12:32:48 GMT 2012
Rank3Aligned Residues712
% Identity28%Templatec1h5nC_
PDB info PDB header:oxidoreductaseChain: C: PDB Molecule:dmso reductase; PDBTitle: dmso reductase modified by the presence of dms and air
Resolution2.0 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   57..60........ .70.........80.........90.........100.........110.........120. ...
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Query Sequence  SSCTVNCGSRCL. LRLHVKDDTVYWVESDTTGDDVYGNHQVRACLRGRSIRRRMNHPDRLKYPMKR. . . . . . . . . . . VGK
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Template Sequence  NGTVM. SGSHWGVFTATVENGRATAFTPWEK. . . . DPHP. . . . SPMLAGVLDSIYSPTRIKYPMVRREFLEKGVNADRST
Template Known Secondary structure 
.TTTT
TT....
SS
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TTSTTB

S
GGGS
GGG
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   5.... 10.........20.........30.... .... .40.........50.........60.........70.....
 
   125....130.........140.........150.........160....... ..170.........180.........190.........200...
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Query Sequence  RGEGKFERISWDEALDTISDNLRRILKDYGNEAVHVLYGTGVD. GGNITNSNVPYRLMNSCGGFLSRYGSYSTAQISAAM
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Template Sequence  RGNGDFVRVSWDQALDLVAAEVKRVEETYGPEGVFGGSYGWKSPGRLHNCTTLLRRMLTLAGGYVNGAGDYSTGAAQVIM
Template Known Secondary structure  TTS




GGG









SS

TT

BB

S
SSSTT
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   76...80.........90.........100.........110.........120.........130.........140.........150.....
 
   204.....210.... .....220.........230......... 240.........250.........260.........270...
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Query Sequence  SYMFGANDGNS. . . . . PDDIANTKLVVMFGNNPAETRMSGG. . . . . GVTYYVEQARERSNARMIVIDPRYNDTAAGREDE
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Template Sequence  PHVVGTLEVYEQQTAWPVLAENTEVMVFWAADPIKTSQIGWVIPEHGAYPGLEALKAK. GTKVIVIDPVRTKTVEFFGAE
Template Known Secondary structure  TSS

TTS

S

SS

TT

SSB


TT.T

SB

T
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   156...160.........170.........180.........190.........200.........210... ......220.........230....
 
   274.....280.........290.........300.........310.........320.........330.........340.........350...
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Query Sequence  WLPIRPGTDGALACAIAWVLITENMVDQPFLDKYCVGYDEKTLPANAPRNAHYKAYILGEGPDGIAKTPEWAAKITSIPA
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Template Sequence  HITPKPQTDVAIMLGMAHTLVAEDLYDKDFIANYTSGFDKFLPYLDG. . . . . . . . . . . . . ETDSTPKTAEWAEGISGVPA
Template Known Secondary structure 


TT
TT
S

TT.............TTTS




S
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   235....240.........250.........260.........270.........280. ........290.........300.
 
   354.....360.........370.........380.........390.........400.........410.........420.........430...
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Query Sequence  EKIIQLAREIGSAKPAYICQGWGPQRHSNGEQTSRAIAMLSVLTGNVGINGGNSGVREGSWDLGVEWFPMLENPVKTQIS
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Template Sequence  ETIKELARLFES. KRTMLAAGWSMQRMHHGEQAHWMLVTLASMLGQIGLPGGGFGLSYHYSGGGTPSTSGPALAGITDGG
Template Known Secondary structure  .S

SGGGSSTTTT
TTSTT
S
TTSTTTTS


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   302.......310... ......320.........330.........340.........350.........360.........370.........380
 
   434.....440 .........450.........460.........470.........480.........490.........500.........510..
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Query Sequence  VFTWTDA. IDHGTEMTATRDGVRGKEKLDVPIKFLWCYASNTLINQHGDINHTHEVLQDDSKCEMIVGIDHFMTASAKYC
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Template Sequence  ASVIPVARVVDMLENPGAEFDFNGTRSKFPDVKMAYWVGGNPFVHHQ. . . . DRNRMVKAWEKLETFVVHDFQWTPTARHA
Template Known Secondary structure 

B

GGG
TT
TT




S

SS....
GGG
SSB

T
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   394.....400.........410.........420.........430.........440 .........450.........460.........
 
   513......520.........530.........540.........550.........560.........570.........580.........590.
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Query Sequence  DILLPDLMPTEQEDLISHESAGNMGYVILAQPATSAKFERKPIYWMLSEVAKRLGPDVYQTFTEGRSQHEWIKYLHAKT.
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Template Sequence  DIVLPATTSYERNDIETIGDYS. NTGILAMKKIVEPLYEARSDYDIFAAVAERLGKGA. . EFTEGKDEMGWIKSFYDDAA
Template Known Secondary structure  SB

GGGS

TTT.




S


TT
B
TT
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   470.........480.........490. ........500.........510.........520...... ...530.........540......
 
   592.......600.........610....... ..620.........630.........640.........650.........660.......
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Query Sequence  . . . KERNPEMPDYEEMKTTGIFKKKCPEE. HYVAFRAFREDPQANPLKTPSGKIEIYSERLAKIADTWELKKDEIIHPLP
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Template Sequence  KQGKAAGVQMPAFDAFWAEGIVEFPVTDGADFVRYASFREDPLLNPLGTPTGLIEIYSKNIEKMG. . . . . . . YDDCPAHP
Template Known Secondary structure  TT




S


SSGGG

TT
TTTS

SSTTSSSS
T.......
TTS
SS
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   547..550.........560.........570.........580.........590.........600.........610. ........
 
   668.670.........680.........690.........700...... ...710.. .......720.........730.........740....
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Query Sequence  AYTPGFDGWDDPLRKTYPLQLTGFHYKARTHSSYGNIDV. . LQQACP. QEVWINPIDAQARGIRHGDTVRVFNNNGEMLI
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Template Sequence  TWMEPLERLDGP. GAKYPLHIAASHPFNRLHSQLNGTVLREGYAVQGHEPCLMHPDDAAARGIADGDVVRVHNDRGQILT
Template Known Secondary structure 




SS
TT
T.T

SS



SSSBTTBTTTSGGGGGT
BTTB

TT

TT

SS
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   620.........630. ........640.........650.........660.........670.........680.........690........
 
   745....750.........760.........770... ......780....... ..790.........800.......
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Query Sequence  AAKVTPRILPGVTAIGQGAWLKADMFGDR. . VDHGGSINILTSHR. PSPLAKGNPSHSNLVQIEKV
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Template Sequence  GVKVTDAVMKGVIQIYEGGWYDPSDVTEPGTLDKYGDVNVLSADIGTSKLAQGNCGQTVLAEVEKY
Template Known Secondary structure 
TTB
TT

TT



BS
TTSTT

BSS

GGGSS



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TTT



TT


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   699700.........710.........720.........730.........740.........750.........760....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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