Job Description P33348 Confidence 99.57% Date Thu Jan 5 11:51:49 GMT 2012 Rank 72 Aligned Residues 200 % Identity 13% Template c3qmzA_ PDB info PDB header:motor protein Chain: A: PDB Molecule:cytoplasmic dynein heavy chain; PDBTitle: crystal structure of the cytoplasmic dynein heavy chain motor domain Resolution 6.00 Å

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		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	E	R	M	L	V	T	L	A	T	G	R	G	L	M	L	V	G	E	P	G	T	A	K	S	L	L	S	E	L	L	A	T	A	I	S	G	D	A	G	L	T	I	Q	G	G	A	S	T	T	E	D	Q	I	K	Y	G	W	N	Y	A	L	L	I	N	H	G	P	S	T	E	A	L	V	P	A	P	L	Y
Query Conservation
Alig confidence																																						.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	F	A	T	L	T	D	S	L	H	Q	K	Y	G	G	C	F	F	G	P	A	G	T	G	K	T	E	T	V	K	A	F	G	Q	N	L	.	G	R	V	V	V	V	F	N	C	D	D	S	F	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	Q	V	L	S	R	L	L	V
Template Known Secondary structure												T	T	T	T							T	T	S	S									T	S	S		.										S	S	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure																																						.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1778	.	1780	.	.	.	.	.	.	.	.	.	1790	.	.	.	.	.	.	.	.	.	1800	.	.	.	.	.	.	.	.	.	1810	.	.	.		.	.	.	.	.	.	1820	.	.	.	.	.	.	.																					.	.	1830	.	.	.	.	.	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.					.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure																																											.	.	.	.
Query SS confidence																																											.	.	.	.
Query Sequence		Q	G	M	R	D	G	K	I	V	R	F	E	E	I	T	R	T	P	L	E	V	Q	D	C	L	L	G	M	L	S	D	R	V	M	T	G	P	E	L	T	G	.	.	.	.	E	A	S	Q	L	Y	A	R	E	G	F	N	I	I	A	T	A	N	T	R	D	R	G	V	N	E	M	S	A	A	L	K	R	R	F
Query Conservation																																											.	.	.	.
Alig confidence																																											.	.	.	.																		.	.	.	.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.	.	.	.
Template Sequence		G	I	T	Q	I	G	A	W	G	C	F	D	E	F	N	R	L	D	E	K	V	L	S	A	V	S	A	N	I	Q	Q	I	Q	N	G	L	Q	V	G	K	S	H	I	T	L	L	E	E	E	T	P	L	S	P	H	T	A	V	F	I	T	L	.	.	.	.	.	.	.	.	.	L	P	E	N	L	K	K	S	F
Template Known Secondary structure					T	T								T	T	T	T	S	S																	T	S	T	T	S	S	S						S	S															.	.	.	.	.	.	.	.	.							T	T	T
Template Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.
Template SS confidence
		1837	.	.	1840	.	.	.	.	.	.	.	.	.	1850	.	.	.	.	.	.	.	.	.	1860	.	.	.	.	.	.	.	.	.	1870	.	.	.	.	.	.	.	.	.	1880	.	.	.	.	.	.	.	.	.	1890	.	.	.	.	.	.	.	.										.	1900	.	.	.	.	.	.	.
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	E	T	V	F	P	I	M	D	F	A	Q	E	L	E	L	V	A	S	A	S	A	R	L	L	A	H	S	G	I	P	H	K	V	P	D	A	V	L	E	L	L	V	R	T	F	R	D	L	R	A	N	G	E	K	K	T	S	M	D	T	L	T	A	I	M	S	T	A	E	A	V	N	V	A	H	A	V	G
Query Conservation
Alig confidence								.	.																.	.	.	.	.	.	.	.	.																								.	.	.	.	.
Template Conservation								.	.																.	.	.	.	.	.	.	.	.																								.	.	.	.	.
Template Sequence		R	E	F	S	M	K	.	.	S	Q	S	G	T	I	A	E	M	I	L	Q	I	M	G	.	.	.	.	.	.	.	.	.	F	E	D	S	K	S	L	A	S	K	I	V	H	F	L	E	L	L	S	S	K	C	S	.	.	.	.	.	S	M	N	H	Y	H	F	G	L	R	T	L	K	G	V	L	R	N	C	S
Template Known Secondary structure								.	.																.	.	.	.	.	.	.	.	.	T	S	S																					.	.	.	.	.	S	S	S
Template Predicted Secondary structure								.	.																.	.	.	.	.	.	.	.	.																								.	.	.	.	.
Template SS confidence
		1917	.	.	1920	.	.			.	.	.	.	.	.	.	1930	.	.	.	.	.	.	.										.	.	1940	.	.	.	.	.	.	.	.	.	1950	.	.	.	.	.	.	.	.	.	1960						.	.	.	.	.	.	.	.	.	1970	.	.	.	.	.	.	.	.	.	1980
		301	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	A	W	F	L	A	N	R	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	L	I	S	E	F	G	E	G	E
Template Known Secondary structure							S	S		S	S
Template Predicted Secondary structure
Template SS confidence
		1982	.	.	.	.	.	.	.	1990	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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