Job Description P33348 Confidence 99.93% Date Thu Jan 5 11:51:49 GMT 2012 Rank 5 Aligned Residues 271 % Identity 18% Template c3k1jA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent protease lon; PDBTitle: crystal structure of lon protease from thermococcus onnurineus na1 Resolution 2.00 Å

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		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	K	V	V	I	S	P	S	A	V	E	R	M	L	V	T	L	A	T	G	R	G	L	M	L	V	G	E	P	G	T	A	K	S	L	L	S	E	L	L	A	T	A	I	S	G	D	A	G	L	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	Q	V	I	G	Q	E	H	A	V	E	V	I	K	T	A	A	N	Q	K	R	H	V	L	L	I	G	E	P	G	T	G	K	S	M	L	G	Q	A	M	A	E	L	L	P	T	E	T	L	E	D	I	L	V	F	P	N	P	E	D	E	N	M	P	R	I	K	T	V	P	A	C	Q	G	R	R	I	V	E	K
Template Known Secondary structure						S														T	T									T	T	S	S											T	S			S	S										T	T		T	T	S								T	T
Template Predicted Secondary structure
Template SS confidence
		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
																													108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	Q	G	G	A	S	T	T	E	D	Q	I	K	Y	G	W	N	Y	A	L	L	I	N	H	G	P	S	T	E	A	L	V	P	A	P	L	Y	Q	G	M	R	D	G	K	I	V	R	F	E	E	I	T	R
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.																.	.
Template Conservation																																																				.																.	.
Template Sequence		Y	R	E	K	A	K	S	Q	E	S	V	L	V	P	K	L	L	V	D	N	C	G	R	T	K	A	P	F	I	D	A	T	G	A	H	A	G	A	L	L	G	D	V	R	H	D	P	F	L	G	.	T	P	A	H	E	R	V	E	P	G	M	I	H	R	A	.	.	H	K	G	V	L	F	I	D	E	I	A	T
Template Known Secondary structure										T												T	T		S	S							T	T																		.			G	G	G	G									T	.	.	T	T	S					T	T	G	G	G
Template Predicted Secondary structure																																																				.																.	.
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170		.	.	.	.	.	.	.	.	.	180	.	.	.	.	.			.	.	.	.	190	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.						.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.						.	.	.	230
Predicted Secondary structure																													.	.	.	.	.																																								.	.	.	.	.
Query SS confidence																													.	.	.	.	.																																								.	.	.	.	.
Query Sequence		T	P	L	E	V	Q	D	C	L	L	G	M	L	S	D	R	V	M	T	G	P	E	L	T	G	E	A	.	.	.	.	.	S	Q	L	Y	A	R	E	G	F	N	I	I	A	T	A	N	T	R	D	R	G	V	N	E	M	S	A	A	L	K	R	R	F	D	F	E	T	V	F	.	.	.	.	.	P	I	M	D
Query Conservation																													.	.	.	.	.																																								.	.	.	.	.
Alig confidence																													.	.	.	.	.																					.	.																		.	.	.	.	.
Template Conservation																																																						.	.
Template Sequence		L	S	L	K	M	Q	Q	S	L	L	T	A	M	Q	E	K	K	F	P	I	T	G	Q	S	E	M	S	S	G	A	M	V	R	T	E	P	V	P	C	D	F	V	L	V	A	A	G	N	L	D	T	V	.	.	D	K	M	H	P	A	L	R	S	R	I	R	G	Y	G	Y	E	V	Y	M	R	T	T	M	P	D
Template Known Secondary structure		S															S					B		S		T	T	S	G	G	G	G		B		S																		.	.			S												S							S
Template Predicted Secondary structure																																																						.	.
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.			.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	Q	E	L	E	L	V	A	S	A	S	A	R	L	L	A	H	S	G	I	P	H	K	V	P	D	A	V	L	E	L	L	V	R	T	F	R	D	L	R	A	N	G	E	K	K	T	S	M	D	T	L	T	A	I	M	S	T	A	E	A	V	N	V	A	H	A	V	G	V	R	A	W	F	L	A	N	R	A
Query Conservation
Alig confidence																																																.	.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.	.
Template Sequence		T	I	E	N	R	R	K	L	V	Q	F	V	A	Q	E	V	K	R	D	G	K	I	P	H	F	T	K	E	A	V	E	E	I	V	R	E	A	Q	K	R	A	G	R	K	G	H	.	.	.	.	.	.	.	.	L	T	L	R	L	R	D	L	G	G	I	V	R	A	A	G	D	I	A	V	K	K	G	K	K	Y
Template Known Secondary structure																						S	S			B	B														T	T		S	T	T		.	.	.	.	.	.	.	.																						T	T		S	S
Template Predicted Secondary structure																																																.	.	.	.	.	.	.	.
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.									.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	P	A	D	L	V	E	C	I	A	G	T	I	V	K	D	N	E	E	D	R	A	R	L	R	R	Y	F	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	E	R	E	D	V	I	E	A	V	K	M	A	K	P	L	E	K	Q	L	A	D	W	Y	I	E	R	K	K	E
Template Known Secondary structure		B												T																	T
Template Predicted Secondary structure
Template SS confidence
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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