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Job DescriptionP33348
Confidence99.74%DateThu Jan 5 11:51:49 GMT 2012
Rank44Aligned Residues213
% Identity21%Templatec2x8aA_
PDB info PDB header:nuclear proteinChain: A: PDB Molecule:nuclear valosin-containing protein-like; PDBTitle: human nuclear valosin containing protein like (nvl), c-2 terminal aaa-atpase domain
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5960.........70... ......80.........90.........100.........110.........120...
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Query Sequence  VVISPSAVERMLVTL. . . . . . . . . . . . . . . ATGRGLMLVGEPGTAKSLLSELLATAISGDAGLTIQGGASTTEDQIKYGW
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Template Sequence  IGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES. GLNFISVKGPELLN. . . . . . . .
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   583......590.........600.........610.........620.........630......... 640.........650...
 
   124.....130.........140.........150.........160.........170.........180.........190.........200...
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Query Sequence  NYALLINHGPSTEALVPAPLYQGMRDGKIVRFEEITRTPLEVQDCLLGMLSDRVMTGPELTGEASQLYAREGFNIIATAN
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Template Sequence  . . . . . MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPSVRVVNQLLTEMDGL. . . . . . . . . . . . EARQQVFIMAATN
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   654.....660.........670.........680.........690.........700... ......710......
 
   204.....210........ .220.........230.........240.........250.........260.........270.........280.
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Query Sequence  TRDRGVNEMSAALKR. . RFDFETVFPIMDFAQELELVASASARLLAHSGIPHKVPDAVLELLVRTFRDLRANGEKKTSMD
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Template Sequence  RPDI. . . . IDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAG. . . . . . . . . . . . . . . . . . . D
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   726... 730.........740.........750.........760.........770.........780. .
 
   282.......290.........300.........310.........320
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Query Sequence  TLTAIMSTAEAVNVAHAVGVRAWFLANRAGEPADLVECI
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Template Sequence  LRCDCYTGADLSALVREASICALRQEMLKVSHKHFEEAF
Template Known Secondary structure  SGGGS




B
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   783......790.........800.........810.........820.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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