Job Description P33348 Confidence 99.87% Date Thu Jan 5 11:51:49 GMT 2012 Rank 16 Aligned Residues 210 % Identity 17% Template c2c99A_ PDB info PDB header:transcription regulation Chain: A: PDB Molecule:psp operon transcriptional activator; PDBTitle: structural basis of the nucleotide driven conformational2 changes in the aaa domain of transcription activator pspf Resolution 1.9 Å

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		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	S	A	V	E	R	M	L	V	T	L	A	T	G	R	G	L	M	L	V	G	E	P	G	T	A	K	S	L	L	S	E	L	L	A	T	A	I	S	G	D	A	G	L	T	I	Q	G	G	A	S	T	T	E	D	Q	I	K	Y	G	W	N	Y	A	L	L	I	N	H	G	P	S	T	E	A	L	V	P	A	P
Query Conservation
Alig confidence																																																																									.	.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.	.
Template Sequence		L	E	V	L	E	Q	V	S	H	L	A	P	L	D	K	P	V	L	I	I	G	E	R	G	T	G	K	E	L	I	A	S	R	L	H	Y	L	S	S	R	W	Q	G	P	F	I	S	L	N	C	A	A	L	N	E	N	L	L	D	S	E	L	F	G	H	E	A	K	R	H	P	.	.	.	.	.	.	.	G	R
Template Known Secondary structure												T	T	S		S								T	T	S	S											T	S	T	T	T	T	S							G	G	G	S												B					B		.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																									.	.	.	.	.	.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.								.	.
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.				.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																			.	.	.
Query SS confidence																																																																			.	.	.
Query Sequence		L	Y	Q	G	M	R	D	G	K	I	V	R	F	E	E	I	T	R	T	P	L	E	V	Q	D	C	L	L	G	M	L	S	D	R	V	M	T	G	P	E	L	T	G	E	A	S	Q	L	Y	A	R	E	G	F	N	I	I	A	T	A	N	T	R	D	R	.	.	.	G	V	N	E	M	S	A	A	L	K	R	R
Query Conservation																																																																			.	.	.
Alig confidence						.	.																															.	.	.	.	.																									.	.	.
Template Conservation						.	.																															.	.	.	.	.
Template Sequence		F	E	R	A	.	.	D	G	G	T	L	F	L	D	E	L	A	T	A	P	M	M	V	Q	E	K	L	L	R	V	I	E	Y	G	E	L	.	.	.	.	.	E	R	V	G	G	S	Q	P	L	Q	V	N	V	R	L	V	C	A	T	N	A	D	L	P	A	M	V	N	E	G	T	F	R	A	D	L	L	D	R
Template Known Secondary structure					T	.	.	T	T	S						S	G	G	G	S															S			.	.	.	.	.				S	S	S														S	S									T	S	S
Template Predicted Secondary structure						.	.																															.	.	.	.	.
Template SS confidence
		96	.	.	.			100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.						130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		220	.	.	.	.	.	.	.	.	.	230	.				.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.			.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure														.	.	.																								.	.
Query SS confidence														.	.	.																								.	.
Query Sequence		F	D	F	E	T	V	F	P	I	M	D	F	.	.	.	A	Q	E	L	E	L	V	A	S	A	S	A	R	L	L	A	H	S	G	I	P	H	K	.	.	V	P	D	A	V	L	E	L	L	V	R	T	F	R	D	L	R	A	N	G	E	K	K	T	S	M	D	T	L	T	A	I	M	S	T	A	E	A	V	N
Query Conservation														.	.	.																								.	.
Alig confidence														.	.	.																								.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	A	F	D	V	V	Q	L	P	P	L	R	E	R	E	S	D	I	M	L	M	A	E	Y	F	A	I	Q	M	C	R	E	I	K	L	P	L	F	P	G	F	T	E	R	A	R	E	T	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	N	Y	R	W	P	G	N	I	R	E	L	K	N
Template Known Secondary structure				S								G	G	G	S																			T	T		S	S				B									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S			T	T
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.																		.	.	220	.	.	.	.	.	.	.	.	.	230	.
		295	.	.	.	.	300	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	H	A	V	G	V	R	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	V	E	R	S	V	Y	R	H
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.	240

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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