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Job DescriptionP33348
Confidence99.56%DateThu Jan 5 11:51:49 GMT 2012
Rank73Aligned Residues159
% Identity13%Templatec1sxjE_
PDB info PDB header:replicationChain: E: PDB Molecule:activator 1 40 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna)
Resolution2.85 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   57..60.........70........ .80.........90.........100.........110.........120.........130...
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Query Sequence  RKVVISPSAVERMLVTLATGRG. . . LMLVGEPGTAKSLLSELLATAISGDAGLTIQGGASTTEDQIKYGWNYALLINHGP
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Template Sequence  NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI. FGPGVYRNVVSSPY. . . . . . . . HLEITPSNDR
Template Known Secondary structure  GG

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   14.....20.........30.........40.........50.........60 .........70.... .....80....
 
   134.....140.........150.........160.........170.........180.........190.........200.........210...
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Query Sequence  STEALVPAPLYQGMRDGKIVRFEEITRTPLEVQDCLLGMLSDRVMTGPELTGEASQLYAREGFNIIATANTRDRGVNEMS
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Template Sequence  IVIQELLKEVAQMEQRYKCVIINEANSLTKDAQAALRRTMEKYSKNI. . . . . . . . . . . . . . . . RLIMVCDSMSP. . . . II
Template Known Secondary structure  TTTT



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   107..110.........120.........130.........140.........150... ......160.... ..
 
   214.....220.........230.........240.....
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Query Sequence  AALKRRFDFETVFPIMDFAQELELVASASARL
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Template Sequence  APIKSQCLLIRCPA. PSDSEISTILSDVVTNE
Template Known Secondary structure  TTS


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   179180.........190.. .......200.........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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