Job Description P33348 Confidence 99.58% Date Thu Jan 5 11:51:49 GMT 2012 Rank 70 Aligned Residues 168 % Identity 14% Template c1sxjD_ PDB info PDB header:replication Chain: D: PDB Molecule:activator 1 41 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

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		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.			.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.					.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure																											.	.																									.	.	.	.
Query SS confidence																											.	.																									.	.	.	.
Query Sequence		Q	N	I	S	R	K	V	V	I	S	P	S	A	V	E	R	M	L	V	T	L	A	T	G	R	.	.	G	L	M	L	V	G	E	P	G	T	A	K	S	L	L	S	E	L	L	A	T	A	I	S	.	.	.	.	G	D	A	G	L	T	I	Q	G	G	A	S	T	T	E	D	Q	I	K	Y	G	W	N	Y	A
Query Conservation																											.	.																									.	.	.	.
Alig confidence																											.	.																									.	.	.	.
Template Conservation
Template Sequence		P	K	N	L	D	E	V	T	A	Q	D	H	A	V	T	V	L	K	K	T	L	K	S	A	N	L	P	H	M	L	F	Y	G	P	P	G	T	G	K	T	S	T	I	L	A	L	T	K	E	L	Y	G	P	D	L	M	K	S	R	I	L	E	L	N	A	S	D	E	R	G	I	S	I	V	R	E	K	V	K	N
Template Known Secondary structure			S	S	T	T	T			S			T	T								T	T		T	T									S	T	T	S	S																			T	T	S						S	S	S								T	T
Template Predicted Secondary structure
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	I	N	H	G	P	S	T	E	A	L	V	P	A	P	L	Y	Q	G	M	R	D	G	K	I	V	R	F	E	E	I	T	R	T	P	L	E	V	Q	D	C	L	L	G	M	L	S	D	R	V	M	T	G	P	E	L	T	G	E	A	S	Q	L	Y	A	R	E	G	F	N	I	I	A	T	A	N	T	R	D
Query Conservation
Alig confidence																						.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	A	R	L	T	V	S	K	P	S	K	H	D	L	E	N	Y	P	C	P	.	.	P	Y	K	I	I	I	L	D	E	A	D	S	M	T	A	D	A	Q	S	A	L	R	R	T	M	E	T	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	G	V	T	R	F	C	L	I	C	N	Y	V	T
Template Known Secondary structure					S							T	T					S				.	.	S							T	T	G	G	G	S															T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T								S		G	G
Template Predicted Secondary structure																						.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.			.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160																	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	V	N	E	M	S	A	A	L	K	R	R	F	D	F	E	T	V	F	P	I	M	D	F	A	Q	E	L	E	L	V	A	S	A	S	A
Query Conservation
Alig confidence			.	.	.	.																	.
Template Conservation			.	.	.	.																	.
Template Sequence		R	.	.	.	.	I	I	D	P	L	A	S	Q	C	S	K	F	R	F	K	A	.	L	D	A	S	N	A	I	D	R	L	R	F	I	S	E
Template Known Secondary structure		G	.	.	.	.	S								S								.
Template Predicted Secondary structure			.	.	.	.																	.
Template SS confidence
		175					.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.		.	.	.	.	.	.	.	.	200	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions