Job Description P33348 Confidence 99.68% Date Thu Jan 5 11:51:49 GMT 2012 Rank 49 Aligned Residues 169 % Identity 17% Template c1nsfA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:n-ethylmaleimide sensitive factor; PDBTitle: d2 hexamerization domain of n-ethylmaleimide sensitive factor (nsf) Resolution 1.90 Å

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		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150		.	.	.	.	.	.
Predicted Secondary structure																																																																											.
Query SS confidence																																																																											.
Query Sequence		G	L	M	L	V	G	E	P	G	T	A	K	S	L	L	S	E	L	L	A	T	A	I	S	G	D	A	G	L	T	I	Q	G	G	A	S	T	T	E	D	Q	I	K	Y	G	W	N	Y	A	L	L	I	N	H	G	P	S	T	E	A	L	V	P	A	P	L	Y	Q	G	M	R	D	G	.	K	I	V	R	F	E
Query Conservation																																																																											.
Alig confidence																									.															.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Template Conservation																									.															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	V	L	L	E	G	P	P	H	S	G	K	T	A	L	A	A	K	I	A	E	E	S	.	N	F	P	F	I	K	I	C	S	P	D	K	M	I	.	.	.	.	.	.	.	.	.	.	.	.	.	G	F	S	E	T	A	K	C	Q	A	M	K	K	I	F	D	D	A	Y	K	S	Q	L	S	C	V	V	V	D
Template Known Secondary structure								S	T	T	S	S													.			S							G	G	G	S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	T																			T	S	S
Template Predicted Secondary structure																									.															.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		538	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560		.	.	.	.	.	.	.	.	.	570	.	.	.	.														.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.
		157	.	.											160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.																																																									.
Query SS confidence					.	.	.	.	.	.	.	.	.	.																																																									.
Query Sequence		E	I	T	.	.	.	.	.	.	.	.	.	.	R	T	P	L	E	V	Q	D	C	L	L	G	M	L	S	D	R	V	M	T	G	P	E	L	T	G	E	A	S	Q	L	Y	A	R	E	G	F	N	I	I	A	T	A	N	T	R	D	R	G	V	N	E	M	S	A	A	.	L	K	R	R	F	D	F	E	T	V
Query Conservation					.	.	.	.	.	.	.	.	.	.																																																									.
Alig confidence					.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.					.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Template Sequence		D	I	E	R	L	L	D	Y	V	P	I	G	P	R	F	S	N	L	V	L	Q	A	L	L	V	L	L	K	K	A	P	P	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	G	R	K	L	L	I	I	G	T	T	S	R	K	D	V	.	.	.	.	L	Q	E	M	E	M	L	N	A	F	S	T	T	I	H
Template Known Secondary structure							T	T		B	T	T	T	T	B													T	T				S	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T										S					.	.	.	.				T	T	G	G	G	T	S	S
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Template SS confidence
		604	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.														.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.					.	.	.	.	.	.	.	.	660	.	.	.	.	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure
Query SS confidence
Query Sequence		F	P	I	M	D	F	A	Q	E	L	E	L	V	A	S	A	S	A	R	L	L	A	H	S	G	I	P	H	K	V	P	D	A	V	L	E	L	L	V	R	T	F	R	D	L	R	A	N	G	E	K	K	T	S	M	D	T	L	T	A	I	M	S	T	A	E	A	V	N	V	A	H	A	V	G
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	P	N	I	A	T	G	E	Q	L	L	E	A	L	E	L	L	.	.	.	.	.	.	.	.	.	.	G	N	F	K	D	K	E	R	T	T	I	A	Q	Q	V	.	.	.	.	.	.	.	.	.	.	.	.	.	K	G	K	K	V	W	I	G	I	K	K	L	L	M	L	I	E	M	S	L
Template Known Secondary structure																			.	.	.	.	.	.	.	.	.	.	T		S													.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S																	T
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		667	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.											.	.	.	.	.	.	690	.	.	.	.	.	.	.	.														.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions