Job Description P37329 Confidence 97.93% Date Thu Jan 5 11:55:15 GMT 2012 Rank 103 Aligned Residues 213 % Identity 17% Template d2v3qa1 SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.89

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		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.												.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.					.	.	100	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.
Query Sequence		Q	D	I	A	T	Q	F	K	K	E	K	G	V	D	V	V	S	S	F	A	S	S	S	T	L	A	R	Q	I	E	A	.	.	.	.	.	.	.	.	.	.	.	G	A	P	A	D	L	F	I	S	A	D	Q	K	W	M	D	Y	A	V	D	K	K	A	I	D	.	.	.	.	T	A	T	R	Q	T	L	L	G
Query Conservation																																	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.
Template Conservation
Template Sequence		Q	K	L	Y	L	T	P	D	V	L	T	A	G	F	A	P	Y	I	G	V	G	S	G	K	G	K	I	A	F	L	E	N	K	Y	N	Q	F	G	T	D	T	T	K	N	V	H	W	A	G	S	D	S	K	L	T	A	T	E	L	A	T	Y	A	A	D	K	E	P	G	W	G	K	L	I	Q	V	P	S	V	A
Template Known Secondary structure						T	S	T	T	T	S		T	T	B																		T		G	G	G	T		S		T	T	S								S	S														T
Template Predicted Secondary structure
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		107	.	.	110	.	.	.	.	.	.	.	.	.	120		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.													.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																.																			.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.																			.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	S	L	V	V	V	A	P	K	A	S	V	Q	K	.	D	F	T	I	D	S	K	T	N	W	T	S	L	L	N	G	G	R	.	.	.	.	.	.	.	.	.	.	.	.	L	A	V	G	D	P	E	H	V	P	A	G	I	Y	A	K	E	A	L	Q	K	L	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																.																			.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.																			.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	S	V	A	I	P	F	R	K	A	G	A	N	A	V	D	L	S	V	K	E	L	C	G	V	F	S	G	R	I	A	D	W	S	G	I	T	G	A	G	R	S	G	P	I	Q	V	V	Y	R	A	E	S	S	G	T	T	E	L	F	T	R	F	L	N	A	K	C	T	T	E	P	G	T	F	A	V	T	T	T
Template Known Secondary structure					B		B	B					S	S															T	S			B	G	G	G	S	T	T	S				S	B							S	S																		S	S	S	S		B				S
Template Predicted Secondary structure
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
							161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.				.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure		.	.	.	.	.																												.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.																												.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	G	A	W	D	T	L	S	P	K	L	A	P	A	E	D	V	R	G	A	L	A	L	V	E	R	N	E	.	.	.	A	P	L	G	I	V	Y	G	S	D	A	V	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.																												.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																												.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	A	N	S	Y	S	L	G	L	T	P	L	A	G	A	V	A	A	T	G	S	D	G	V	M	A	A	L	N	D	T	T	V	A	E	G	R	I	T	Y	I	S	P	D	F	A	A	P	T	L	A	G	L	D	D	A	T	K	V	A	R	V	G	K	G	V	V	N	G	V	A	V	E	G	K	S	P	A	A	A
Template Known Secondary structure		G	G	G	T	B	T	T		S	T	T	S	T	T					S												T	T	S		S						B						S	S	S	G	G	G	G	G		T	T	T	B									T	T						B				T
Template Predicted Secondary structure
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
																														201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.						.	230	.	.	.	.	.	.	.	.	.	240	.	.	.			.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.																.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.																.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	K	G	V	K	V	V	A	T	F	P	E	D	S	H	K	K	V	E	Y	P	V	A	V	V	E	G	H	.	.	.	.	.	N	N	A	T	V	K	A	F	Y	D	Y	L	K	G	P	.	.	Q	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.																.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.																.	.
Template Conservation
Template Sequence		N	V	S	A	A	I	S	V	V	P	L	P	A	A	A	D	R	G	N	P	D	V	W	V	P	V	F	G	A	T	T	G	G	G	V	V	A	Y	P	D	S	G	Y	P	I	L	G	F	T	N	L	I	F	S	Q	C	Y	A	N	A	T	Q	T	G	Q	V	R	D	F	F	T	K	H	Y	G	T	S	A	N	N
Template Known Secondary structure									T						G	G	G	T	T		G	G	G	G	S					S	S		B	T	T						S	S	S		S											S		B	S	S															T		S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
		246	.	.	.	250	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	I	F	K	R	Y	G	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	A	A	I	E	A	N	A	F
Template Known Secondary structure								T	T
Template Predicted Secondary structure
Template SS confidence
		331	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions