Job Description P37329 Confidence 99.92% Date Thu Jan 5 11:55:15 GMT 2012 Rank 13 Aligned Residues 226 % Identity 17% Template d1y9ua_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.39

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.			.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.																													.	.	.	.	.
Query SS confidence																																															.	.																													.	.	.	.	.
Query Sequence		G	K	I	T	V	F	A	A	A	S	L	T	N	A	M	Q	D	I	A	T	Q	F	K	K	E	K	G	V	D	V	V	S	S	F	A	S	S	S	T	L	A	R	Q	I	E	.	.	A	G	A	P	A	D	L	F	I	S	A	D	Q	K	W	M	D	Y	A	V	D	K	K	A	I	D	T	A	.	.	.	.	.
Query Conservation																																															.	.																													.	.	.	.	.
Alig confidence												.																																			.	.																													.	.	.	.	.
Template Conservation												.
Template Sequence		D	E	V	S	L	Y	T	T	R	E	.	P	K	L	I	Q	P	L	L	D	A	F	A	K	D	S	G	I	K	V	N	T	V	F	V	K	D	G	L	L	E	R	V	R	A	E	G	D	K	S	P	A	D	V	L	M	T	V	D	I	G	N	L	I	D	L	V	N	G	G	V	T	Q	K	I	Q	S	Q	T	L
Template Known Secondary structure									S	S		.	G	G	G	T																					S	S										G	G	G										S										T	T
Template Predicted Secondary structure												.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.		.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
															100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	T	R	Q	T	L	L	G	N	S	L	V	V	V	A	P	K	A	S	V	Q	K	D	F	T	I	D	S	K	T	N	W	T	S	L	L	N	G	G	R	L	A	V	G	D	P	E	H	V	P	A	G	I	Y	A	K	E	A	L	Q	K	L	G	A	W	D	T	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Template Conservation																																				.	.	.
Template Sequence		D	S	V	V	P	A	N	L	R	G	A	E	G	S	W	Y	A	L	S	L	R	D	R	V	L	Y	V	E	K	D	L	K	L	D	.	.	.	S	F	R	Y	G	D	L	A	D	P	K	W	K	G	K	V	C	I	R	S	G	Q	H	P	Y	N	T	A	L	V	A	A	M	I	A	H	D	G	A	E	A	T	E
Template Known Secondary structure					S		G	G	G	B		G	G	G	S															T	T					.	.	.			B	G	G	G	G	G		G	G	G	T	T							T	T	S
Template Predicted Secondary structure																																				.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.				.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
										167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.														.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	S	P	K	L	A	P	A	E	D	V	R	G	A	L	A	L	V	E	R	N	E	A	P	L	G	I	V	Y	G	S	D	A	V	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	K	G	V	K	V	V	A	T	F	P	E	D	S	H	K	K	V	E	Y	P	V	A	V	V
Query Conservation		.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	W	L	R	G	V	K	A	N	L	A	R	K	A	A	G	G	D	R	D	V	A	R	D	I	L	G	G	I	C	D	I	G	L	A	N	A	Y	Y	V	G	H	M	K	N	A	E	P	G	T	D	A	R	K	W	G	D	A	I	K	V	V	R	P	T	F	A	G	G	T	H	V	N	I	S	G	A	A	V	A
Template Known Secondary structure											B	S	S		S		S											T	T	S		S															S		T	T	S								T							B					B
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		226	.	.	.	230	.	.		.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		E	G	H	N	N	A	T	.	V	K	A	F	Y	D	Y	L	K	G	P	Q	A	A	E	I	F	K	R	Y	G	F	T	I
Query Conservation									.
Alig confidence									.
Template Conservation
Template Sequence		A	H	A	P	N	K	A	N	A	V	K	L	L	E	Y	L	V	S	E	P	A	Q	T	L	Y	A	Q	A	N	Y	E	Y
Template Known Secondary structure		T	T		T	T												T	S											T	T
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions