Job Description P37329 Confidence 99.92% Date Thu Jan 5 11:55:15 GMT 2012 Rank 16 Aligned Residues 228 % Identity 18% Template d1y4ta_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.80

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.				.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.																													.	.	.	.	.
Query SS confidence																																														.	.	.																													.	.	.	.	.
Query Sequence		K	I	T	V	F	A	A	A	S	L	T	N	A	M	Q	D	I	A	T	Q	F	K	K	E	K	G	V	D	V	V	S	S	F	A	S	S	S	T	L	A	R	Q	I	E	.	.	.	A	G	A	P	A	D	L	F	I	S	A	D	Q	K	W	M	D	Y	A	V	D	K	K	A	I	D	T	A	.	.	.	.	.
Query Conservation																																														.	.	.																													.	.	.	.	.
Alig confidence											.																																			.	.	.																													.	.	.	.	.
Template Conservation											.
Template Sequence		E	L	N	I	Y	S	A	R	H	.	Y	N	A	D	F	E	I	I	K	K	F	E	E	K	T	G	I	K	V	N	H	T	Q	A	K	A	S	E	L	I	K	R	L	S	L	E	G	S	N	S	P	A	D	I	F	I	T	A	D	I	S	N	L	T	E	A	K	N	L	G	L	L	S	P	V	S	S	K	Y	L
Template Known Secondary structure											.		T																																			G	G	G									S	S										T	T
Template Predicted Secondary structure											.
Template SS confidence
		6	.	.	.	10	.	.	.	.		.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
															100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																																																																			.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																																																																			.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	T	R	Q	T	L	L	G	N	S	L	V	V	V	A	P	K	A	S	V	Q	K	D	F	T	I	D	S	K	T	N	W	T	S	L	L	N	G	G	R	L	A	V	G	D	P	E	H	V	P	A	G	I	Y	A	K	E	A	L	Q	K	L	G	A	W	D	T	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.																																																																			.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																																																																			.
Template Conservation
Template Sequence		E	E	F	I	P	A	H	L	R	D	K	D	K	E	W	F	A	I	T	K	R	A	R	I	I	A	Y	N	K	N	T	N	I	D	I	S	K	M	K	N	Y	E	D	L	A	K	A	E	F	K	G	E	I	V	M	R	S	A	T	A	P	Y	S	K	T	L	L	A	S	I	I	A	N	D	G	N	K	E	A	K
Template Known Secondary structure					S		G	G	G	B		T	T	S	S															T	T	S					T	T			S	G	G	G	G	G		G	G	G	T	T							T	T	S
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
									166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.											.	.	.	.	210	.	.	.				.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.									.	.	.
Query SS confidence		.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.									.	.	.
Query Sequence		.	.	.	.	.	.	.	L	S	P	K	L	A	P	A	E	D	V	R	G	A	L	A	L	V	E	R	N	E	A	P	L	G	I	V	Y	G	S	D	A	V	A	S	K	G	V	K	.	.	.	.	.	.	.	.	.	.	V	V	A	T	F	P	E	D	.	.	.	S	H	K	K	V	E	Y	P	V	A	V	V
Query Conservation		.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.									.	.	.
Alig confidence		.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.									.	.	.
Template Conservation
Template Sequence		A	W	A	K	G	V	L	E	N	L	A	T	N	P	K	G	G	D	R	D	Q	A	R	Q	V	F	A	G	E	A	K	F	A	V	M	N	T	Y	Y	I	G	L	L	K	N	S	K	N	P	K	D	V	E	V	G	N	S	L	G	I	I	F	P	N	Q	D	N	R	G	T	H	I	N	I	S	G	I	A	M	T
Template Known Secondary structure											B	S	S	S			S	S											T	S		S														T		S	S									T						T	T	T	T	T	T		B
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		226	.	.	.	230	.	.		.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		E	G	H	N	N	A	T	.	V	K	A	F	Y	D	Y	L	K	G	P	Q	A	A	E	I	F	K	R	Y	G	F	T	I
Query Conservation									.
Alig confidence									.
Template Conservation
Template Sequence		K	S	S	K	N	Q	D	A	A	K	K	F	M	E	F	M	L	S	P	E	I	Q	K	I	L	T	D	S	N	Y	E	F
Template Known Secondary structure		T	T		S													T	S
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions