Job Description P37329 Confidence 98.91% Date Thu Jan 5 11:55:15 GMT 2012 Rank 80 Aligned Residues 226 % Identity 15% Template d1y3na1 SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.60

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.				.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.						.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.		.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.																					.	.	.	.	.																					.
Query SS confidence																		.	.	.																					.	.	.	.	.																					.
Query Sequence		K	I	T	V	F	A	A	A	S	L	T	N	A	M	Q	D	.	.	.	I	A	T	Q	F	K	K	E	K	G	V	D	V	V	S	S	F	A	S	S	.	.	.	.	.	S	T	L	A	R	Q	I	E	A	G	A	P	A	D	L	F	I	S	A	D	.	Q	K	W	M	D	Y	A	V	D	K	K	A	I	D	T
Query Conservation																		.	.	.																					.	.	.	.	.																					.
Alig confidence																		.	.	.																					.	.	.	.	.																					.
Template Conservation
Template Sequence		T	L	K	I	H	M	H	F	R	D	K	W	V	W	D	E	N	W	P	V	A	R	E	V	A	R	L	T	N	V	K	L	V	G	V	A	N	R	A	A	T	N	S	Q	E	Q	F	N	L	M	M	A	S	G	Q	L	P	D	I	V	G	G	D	N	L	K	D	K	F	I	R	Y	G	M	E	G	A	F	I	P
Template Known Secondary structure										T	T	T					T	T	S											S							S		S	S		S											T	S	S	S			S					T	T											T	T	S	B
Template Predicted Secondary structure
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		99																																	100	.	.	.	.	.	.	.	.	.				110	.	.	.	.	.	.			.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.								.	.																							.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.								.	.																							.	.	.
Query Sequence		A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	R	Q	T	L	L	G	N	S	L	.	.	.	V	V	V	A	P	K	A	.	.	S	V	Q	K	D	F	T	I	D	S	K	T	N	W	T	S	L	L	N	G	G	R	.	.	.
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.								.	.																							.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.								.	.																							.	.	.
Template Conservation
Template Sequence		L	N	K	L	I	D	Q	N	A	P	N	L	K	A	F	F	K	T	H	P	E	V	Q	R	A	I	T	A	P	D	G	N	I	Y	Y	L	P	Y	V	P	D	G	L	V	S	R	G	Y	F	I	R	Q	D	W	L	D	K	L	H	L	K	T	P	Q	T	V	D	E	L	Y	T	V	L	K	A	F	K	E	K	D
Template Known Secondary structure																												B		T	T	S		B										S															T	T						B														S
Template Predicted Secondary structure
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
																																														139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	V	G	D	P	E	H	V	P	A	G	I	Y	A	K	E	A	L	Q	K	L	G	A	W	D	T	L	S	P	K	L	A	P	A	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.
Template Conservation																																																																														.
Template Sequence		P	N	G	N	G	K	A	D	E	I	P	F	I	N	R	D	P	E	E	V	F	R	L	V	N	F	W	G	A	R	S	T	G	S	N	T	W	M	D	F	Y	V	E	N	G	K	I	K	H	P	F	A	E	V	A	F	K	D	G	I	K	H	V	A	Q	W	Y	K	E	G	L	I	D	P	E	I	.	F	T	R
Template Known Secondary structure		T	T		S	S	S									S		T						G	G	G	G	G	T			S		S	S	S	S	T	T						T	T					G	G	G	S																T	T	S	B		T	T	T	.	T	T	S
Template Predicted Secondary structure																																																																														.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.		.	.	250
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.									.	.	.	.	.	.	.	210	.	.	.	.	.												.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.		.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.																		.
Query SS confidence																														.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.																		.
Query Sequence		D	V	R	G	A	L	A	L	V	E	R	N	E	A	P	L	G	I	V	Y	G	S	D	A	V	A	S	K	.	.	.	.	.	.	.	.	G	V	K	V	V	A	T	F	P	E	D	S	H	.	.	.	.	.	.	.	.	.	.	.	K	K	V	E	Y	P	V	A	V	V	E	G	H	N	N	A	T	.	V	K
Query Conservation																														.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.																		.
Alig confidence																														.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.																		.
Template Conservation
Template Sequence		K	A	R	S	R	E	Q	T	F	G	N	N	I	G	G	M	T	H	D	W	F	A	S	T	A	L	F	N	D	A	L	S	K	N	I	P	G	F	K	L	V	P	M	A	P	P	I	N	S	K	G	Q	R	W	E	E	D	A	R	Q	I	P	R	P	D	G	W	A	I	T	A	T	N	K	N	P	V	E	T	I
Template Known Secondary structure		G	G	G						T	T	T	T																			S	T	T	T	S	T	T										B		T	T	S		B		B						S	S		S						B	T	T		S
Template Predicted Secondary structure
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	Y	D	Y	L	K	G	P	Q	A	A	E	I	F	K	R	Y	G	F	T	I	K
Query Conservation
Alig confidence																		.	.	.
Template Conservation																		.	.	.
Template Sequence		K	L	F	D	F	Y	F	G	P	K	G	R	E	L	S	N	.	.	.	F	G	V	P
Template Known Secondary structure							T	T	S									.	.	.				B
Template Predicted Secondary structure																		.	.	.
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.				.	.	.	350

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions