Job Description P37329 Confidence 96.53% Date Thu Jan 5 11:55:15 GMT 2012 Rank 128 Aligned Residues 159 % Identity 14% Template d1us5a_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.5

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		25	.	.	.	.	30	.	.	.	.				.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure												.	.	.																		.
Query SS confidence												.	.	.																		.
Query Sequence		D	E	G	K	I	T	V	F	A	A	.	.	.	A	S	L	T	N	A	M	Q	D	I	A	T	Q	F	K	K	E	.	K	G	V	D	V	V	S	S	F	A	S	S	S	T	L	A	R	Q	I	E	A	G	A	P	A	D	L	F	I	S	A	D	Q	K	W	M	D	Y	A	V	D	K	K	A	I	D	T	A	T
Query Conservation												.	.	.																		.
Alig confidence												.	.	.																		.
Template Conservation
Template Sequence		A	Q	E	F	I	T	I	G	S	G	S	T	T	G	V	Y	F	P	V	A	T	G	I	A	K	L	V	N	D	A	N	V	G	I	R	A	N	A	R	S	T	G	G	S	V	A	N	I	N	A	I	N	A	G	E	F	E	M	A	L	A	Q	N	D	I	A	Y	Y	A	Y	Q	G	C	C	I	P	A	F	E	G
Template Known Secondary structure													T	T	S	S																T	S	S									S											T	T	S		S															T		S	S	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
										101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	R	Q	T	L	L	G	N	S	L	V	V	V	A	P	K	A	S	V	Q	K	D	F	T	I	D	S	K	T	N	W	T	S	L	L	N	G	G	R	L	A	V	G	D	P	E	H	V	P	A	G	I	Y	A	K	E	A	L	Q	K	L	G	A	W	D	T	L	S	P	K	L	A	P
Query Conservation		.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																			.	.	.	.	.								.	.	.	.	.																															.
Template Conservation																												.	.	.	.	.								.	.	.	.	.																															.
Template Sequence		K	P	V	K	T	I	R	A	L	A	A	L	Y	P	E	V	V	H	V	V	A	R	K	D	A	G	.	.	.	.	.	I	R	T	V	A	D	L	.	.	.	.	.	K	G	K	R	V	V	V	G	D	V	G	S	G	T	E	Q	N	A	R	Q	I	L	E	A	Y	G	L	T	F	D	.	D	L	G	Q	A	I
Template Known Secondary structure					T	T																		T	T	S	S	.	.	.	.	.		S	S	G	G	G	G	.	.	.	.	.	T	T	S							T	T														T	T			G	G	.	G	S	S
Template Predicted Secondary structure																												.	.	.	.	.								.	.	.	.	.																															.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.						.	.	.	.	.	.	.						130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.		160	.	.	.	.	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	D	V	R	G	A	L	A	L	V	E	R	N	E	A	P	L	G	I	V	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	V	S	A	S	Q	G	I	Q	L	M	Q	D	K	R	A	D	A	L	F	Y	T
Template Known Secondary structure														T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions