Job Description P37329 Confidence 94.84% Date Thu Jan 5 11:55:15 GMT 2012 Rank 144 Aligned Residues 211 % Identity 10% Template d1r9la_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.59

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		23	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.			.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure														.																								.																						.	.
Query SS confidence														.																								.																						.	.
Query Sequence		L	A	D	E	G	K	I	T	V	F	A	A	.	A	S	L	T	N	A	M	Q	D	I	A	T	Q	F	K	K	E	K	G	V	D	V	V	.	S	S	F	A	S	S	S	T	L	A	R	Q	I	E	A	G	A	P	A	D	L	.	.	F	I	S	A	D	Q	K	W	M	D	Y	A	V	D	K	K	A	I	D	T
Query Conservation														.																								.																						.	.
Alig confidence														.																								.																						.	.
Template Conservation
Template Sequence		P	G	K	G	I	T	V	N	P	V	Q	S	T	I	T	E	E	T	F	Q	T	L	L	V	S	R	A	L	E	K	L	G	Y	T	V	N	K	P	S	E	V	D	Y	N	V	G	Y	T	S	L	A	S	G	D	A	T	F	T	A	V	N	W	T	P	L	H	D	N	M	Y	E	A	A	G	G	D	K	K	F	Y
Template Known Secondary structure		T	T	T	T									S		G	G	G														T	T																					T	S	S									T	T	T							T	T	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.										.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.
Query Sequence		A	T	R	Q	T	L	L	G	N	S	L	V	V	V	A	P	K	A	S	V	Q	K	D	F	T	I	D	S	K	T	N	W	T	S	L	L	.	.	.	.	.	.	.	.	.	N	G	G	R	L	A	V	G	D	P	E	H	V	P	A	G	I	Y	A	K	E	A	L	Q	K	L	G	A	W	D	T	L	S	P	K
Query Conservation																																						.	.	.	.	.	.	.	.	.
Alig confidence																									.													.	.	.	.	.	.	.	.	.																														.	.	.	.
Template Conservation																									.																																																			.	.	.	.
Template Sequence		R	E	G	V	F	V	N	G	A	A	Q	G	Y	L	I	D	K	K	T	A	D	Q	Y	.	K	I	T	N	I	A	Q	L	K	D	P	K	I	A	K	L	F	D	T	N	G	D	G	K	A	D	L	T	G	C	N	P	G	W	G	C	E	G	A	I	N	H	Q	L	A	A	Y	E	L	T	.	.	.	.	N	T
Template Known Secondary structure				S		S																			.	T			B	G	G	G	G	G	S					G	G	G		S	S	S	S	S	S								T	T	S													T	T		T	.	.	.	.	T	T
Template Predicted Secondary structure																									.																																																			.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.		.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.					.	.
		170	.	.	.	.	.	.						.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.					.	.	.	.	.	.	210	.	.	.																			.	.	.	.	.	.	220	.	.
Predicted Secondary structure									.	.	.	.	.																												.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.																												.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	A	P	A	E	D	V	.	.	.	.	.	R	G	A	L	A	L	V	E	R	N	E	A	P	L	G	I	V	Y	G	S	D	A	V	A	S	K	G	.	.	.	.	V	K	V	V	A	T	F	P	E	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	H	K	K	V	E	Y	P	V
Query Conservation									.	.	.	.	.																												.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.																												.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	T	H	N	Q	G	N	Y	A	A	M	M	A	D	T	I	S	R	Y	K	E	G	K	P	V	F	Y	Y	T	W	T	P	Y	W	V	S	N	E	L	K	P	G	K	D	V	V	W	L	Q	V	P	F	S	A	L	P	G	D	K	N	A	D	T	K	L	P	N	G	A	N	Y	G	F	P	V	S	T	M	H	I
Template Known Secondary structure							S															T	T										S	S	S					S		B	T	T	T					B		S	S				T	T		T	T				B		T	T	S		B		S	S		S
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		223	.	.	.	.			.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.
Query SS confidence							.	.
Query Sequence		A	V	V	E	G	.	.	H	N	N	A	T	V	K	A	F	Y	D
Query Conservation							.	.
Alig confidence							.	.
Template Conservation
Template Sequence		V	A	N	K	A	W	A	E	K	N	P	A	A	A	K	L	F	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions