Return to main results Retrieve Phyre Job Id

Job DescriptionP37329
Confidence98.40%DateThu Jan 5 11:55:15 GMT 2012
Rank92Aligned Residues211
% Identity16%Templated1p99a_
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution1.70

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   28.30.........40.........50.........60.........70.........80.........90.........100.......
Predicted Secondary structure 























Query SS confidence 















































































Query Sequence  KITVFAAASLTNAMQDIATQFKKEKGVDVVSSFASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQTLLGN
Query Conservation   
 
            
   


  

 
      
                                            
Alig confidence 























.






















































Template Conservation   



                   .

 

   
        

 

 

       
 
           
  
     
Template Sequence  KVTIGVASNDTKAWEKVKELAKKD. DIDVEIKHFSDYNLPNKALNDGDIDMNAFQHFAFLDQYKKAHKGTKISALSTTVL
Template Known Secondary structure 
SSS

GGG.T


SSTTSTTSSS
TT

Template Predicted Secondary structure 





.




















Template SS confidence 















































































   40.........50.........60... ......70.........80.........90.........100.........110........
 
   108.110.........120.........130.........140.........150.........160.. .......170...
Predicted Secondary structure 

























..............


Query SS confidence 






















































. . . . . . . . . . . . . .










Query Sequence  SLVVVAPKASVQKDFTIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGA. . . . . . . . . . . . . . WDTLSPKLAPA
Query Conservation                        
        
          
            ..............           
Alig confidence 










..........












..


















..............










Template Conservation      
      ..........     






 ..          
  
   

              

      
 
Template Sequence  APLGIYSDKIK. . . . . . . . . . DVKKVKDGAKVVI. . PNDVSNQARALKLLEAAGLIKLKKDFGLAGTVKDITSNPKHLKI
Template Known Secondary structure 



SS
S..........
GGG

TT
..
STTS

TT

TT

GGG
TT

Template Predicted Secondary structure 





..........




..























Template SS confidence 















































































   119120......... 130.........140.. .......150.........160.........170.........180......
 
   174.....180.........190.........200.........210. ........220.........230.. .......240.......
Predicted Secondary structure 












.....








.

Query SS confidence 





































. . . . .




















.














Query Sequence  EDVRGALALVERNEAPLGIVYGSDAVASKGVKVVATFP. . . . . EDSHKKVEYPVAVVEGHNNAT. VKAFYDYLKGPQAAE
Query Conservation           
  
                        
.....            
 
      .
  

 

 
 
 
 
Alig confidence 





































.....




















.














Template Conservation 
         
   



    
    
                                     
     
    

  
Template Sequence  TAVDAQQTARALSDVDIAVINNGVATKAGKDPKNDPIFLEKSNSDAVKPYINIVAVNDKDLDNKTYAKIVELYHSKEAQK
Template Known Secondary structure 
GGGTTGGGGTSS
TT

TTTS
S


SSGGGGGGGGGTT
S
Template Predicted Secondary structure 



























Template SS confidence 















































































   187..190.........200.........210.........220.........230.........240.........250.........260......
 
   248.250.
Predicted Secondary structure 
Query SS confidence 



Query Sequence  IFKR
Query Conservation      
Alig confidence 



Template Conservation   
  
Template Sequence  ALQE
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 



   267..270
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions