Return to main results Retrieve Phyre Job Id

Job DescriptionP37329
Confidence99.92%DateThu Jan 5 11:55:15 GMT 2012
Rank17Aligned Residues228
% Identity20%Templated1nnfa_
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution1.10

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   28.30.........40.........50.........60.........70. ........80.........90.........
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Query Sequence  KITVFAAASLTNAMQDIATQFKKEKGVDVVSSFASSSTLARQIE. . . AGAPADLFISADQKWMDYAVDKKAIDTA. . . . .
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Template Sequence  DITVYNGQQ. KEAATAVAKAFEQETGIKVTLNSGKSEQLAGQLKEEGDKTPADVFYTEQTATFADLSEAGLLAPISEQTI
Template Known Secondary structure 

S
.S




GGG


SS
GGGTT
B



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   1........ 10.........20.........30.........40.........50.........60.........70.........
 
   100.........110.........120.........130.........140.........150...... ...160
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Query Sequence  . . . . . . . . . . . . . . TRQTLLGNSLVVVAPKASVQKDFTIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEA. . . . . LQKL
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Template Sequence  QQTAQKGVPLAPKKDWIALSGRSRVVVYDHTKLSEKDMEKSVLDYATPKWKGKIGYVSTSGAFLEQVVALSKMKGDKVAL
Template Known Secondary structure  TT

TT



TTS

TTT

GGGS
SSGGGGGSGGGTTT
TTS
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   80.........90.........100.........110.........120.........130.........140.........150.........
 
   161........170.........180.........190.........200... ......210.........220.........230.
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Query Sequence  GAWDTLSPKLAPAEDVRGALALVERNEAPLGIVYGSDAVASKG. . . . . . . . . VKVVATFPEDSHKKVEYPVAVVEGHNNA
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Template Conservation                           
                                    
         
   
   
Template Sequence  NWLKGLKENGKLYAKNSVALQAVENGEVPAALINNYYWYNLAKEKGVENLKSRLYFVRHQDPGALVSYSGAAVLKASKNQ
Template Known Secondary structure 
SSTTS
S
GGG
S


TT
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   160.........170.........180.........190.........200.........210.........220.........230.........
 
   232 .......240.........250......
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Query Sequence  T. VKAFYDYLKGPQAAEIFKRYGFTI
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Template Sequence  AEAQKFVDFLASKKGQEALVAARAEY
Template Known Secondary structure  SS

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   240.........250.........260.....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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