Job Description P37329 Confidence 99.58% Date Thu Jan 5 11:55:15 GMT 2012 Rank 62 Aligned Residues 229 % Identity 11% Template c3uorB_ PDB info PDB header:sugar binding protein Chain: B: PDB Molecule:abc transporter sugar binding protein; PDBTitle: the structure of the sugar-binding protein male from the phytopathogen2 xanthomonas citri Resolution 2.20 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.					.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.														.	.	.	.																																			.	.
Query SS confidence																												.														.	.	.	.																																			.	.
Query Sequence		G	K	I	T	V	F	A	A	A	S	L	T	N	A	M	Q	D	I	A	T	Q	F	K	K	E	K	.	G	V	D	V	V	S	S	F	A	S	S	S	T	.	.	.	.	L	A	R	Q	I	E	A	G	A	P	A	D	L	F	I	S	A	D	Q	K	W	M	D	Y	A	V	D	K	K	A	I	D	T	A	.	.
Query Conservation																												.														.	.	.	.																																			.	.
Alig confidence																												.														.	.	.	.																	.																		.	.
Template Conservation																																																														.
Template Sequence		T	T	V	R	F	W	A	M	G	K	E	A	E	V	V	A	E	L	V	A	D	F	E	K	Q	N	P	T	I	H	V	D	V	Q	N	I	P	M	T	A	A	H	E	K	L	L	T	A	F	A	A	D	G	L	P	D	V	C	Q	L	.	G	N	T	W	L	P	E	F	A	L	L	D	T	L	E	P	M	Q	P
Template Known Secondary structure										T														T	T	T	S	T	T										T	T	T	T	T									T	T				S					.		G	G	G							T	T		B
Template Predicted Secondary structure																																																														.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
																													100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120				.	.	.	.	.	.	.	.	.	130	.	.								.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.													.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.													.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	R	Q	T	L	L	G	N	S	L	V	V	V	A	P	K	A	S	V	Q	K	.	.	.	D	F	T	I	D	S	K	T	N	W	T	S	.	.	.	.	.	.	.	L	L	N	G	G	R	L	A	V	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.													.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.													.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	V	A	R	S	K	I	V	D	P	A	D	Y	F	P	G	V	W	D	T	N	L	V	D	G	T	L	Y	G	V	P	W	Y	V	D	T	R	L	L	F	Y	R	K	D	L	L	R	E	A	G	Y	S	Q	M	P	K	T	W	A	E	M	E	Q	V	M	A	A	I	K	R	K	V	G	P	D	R	Y	A	I	L
Template Known Secondary structure							S	S			G	G	G	B							T	T			T	T																								T	T		S	S				B																	T	T	S
Template Predicted Secondary structure
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170																										.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	P	E	H	V	P	A	G	I	Y	A	K	E	A	L	Q	K	L	G	A	W	D	T	L	S	P	K	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	P	A	E	D	V	R	G	A	L	A	L	V	E	R	N	E	A	P	L	G	I	V	Y	G	S	D
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	P	L	N	E	F	E	Q	Q	L	S	F	A	L	Q	Q	D	D	R	L	L	R	D	H	D	N	Y	G	N	F	R	G	A	G	F	R	K	A	L	G	F	Y	D	N	M	Y	Q	Q	G	W	A	P	K	V	S	E	T	Q	V	S	N	V	W	Y	E	F	F	N	G	Y	Y	A	F	Y	L	S	G	P	W	N
Template Known Secondary structure				T	T											T	S	S	S		S			T	T	T	T				T	T	S																T	T	S	S		S			G	G	G		S								T	T	S								T
Template Predicted Secondary structure
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
		198	.	200	.	.								.	.	.	.	.	.	.	210	.						.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.		.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.										.	.	.	.	.																						.
Query SS confidence							.	.	.	.	.	.	.										.	.	.	.	.																						.
Query Sequence		A	V	A	S	K	.	.	.	.	.	.	.	G	V	K	V	V	A	T	F	P	.	.	.	.	.	E	D	S	H	K	K	V	E	Y	P	V	A	V	V	E	G	H	N	N	A	T	.	V	K	A	F	Y	D	Y	L	K	G	P	Q	A	A	E	I	F	K	R	Y	G	F	T	I
Query Conservation							.	.	.	.	.	.	.										.	.	.	.	.																						.
Alig confidence							.	.	.	.	.	.	.										.	.	.	.	.																						.
Template Conservation
Template Sequence		V	R	E	F	K	L	R	Q	P	P	G	M	E	G	N	W	G	T	A	P	L	P	G	P	N	G	L	G	A	G	I	A	G	G	S	S	L	V	I	F	K	S	S	Q	H	K	D	A	S	W	K	L	I	E	Y	L	S	Q	P	Q	V	Q	A	R	F	H	A	I	I	G	D	L
Template Known Secondary structure											G	G	G	T	T	S								B	T	T	S	S													B	T	T		S													T	S														B
Template Predicted Secondary structure
Template SS confidence
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions