Job Description P37329 Confidence 99.54% Date Thu Jan 5 11:55:15 GMT 2012 Rank 67 Aligned Residues 235 % Identity 14% Template c3qufB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:extracellular solute-binding protein, family 1; PDBTitle: the structure of a family 1 extracellular solute-binding protein from2 bifidobacterium longum subsp. infantis Resolution 1.70 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.						.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																																		.															.	.	.	.	.
Query SS confidence																																		.															.	.	.	.	.
Query Sequence		G	N	A	L	A	D	E	G	K	I	T	V	F	A	A	A	S	L	T	N	A	M	Q	D	I	A	T	Q	F	K	K	E	.	K	G	V	D	V	V	S	S	F	A	S	S	S	T	.	.	.	.	.	L	A	R	Q	I	E	A	G	A	P	A	D	L	F	I	S	A	D	Q	K	W	M	D	Y	A	V	D	K
Query Conservation																																		.															.	.	.	.	.
Alig confidence																			.															.															.	.	.	.	.																	.
Template Conservation																			.																																																			.
Template Sequence		G	T	A	G	G	G	K	T	K	I	S	F	Y	S	Y	F	K	.	D	N	Q	I	G	E	V	V	K	G	F	E	K	K	N	P	D	I	T	L	D	V	Q	Y	G	Q	D	P	A	Q	Y	I	S	T	L	Q	T	R	L	A	G	G	K	P	P	T	I	F	N	L	.	T	X	D	N	R	T	D	V	X	K	S
Template Known Secondary structure				G	G	G										S	S		.																T	T									S	S														S	S	S			S					.		T	T	T
Template Predicted Secondary structure																			.																																																			.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.		.	100	.	.	.	.	.	.	.	.	.
		94	.	.	.	.	.	100	.	.																								.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.				.	.	.	.	.	.	.	.	130	.	.					.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.												.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.												.	.	.	.
Query Sequence		K	A	I	D	T	A	T	R	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	L	L	G	N	S	L	V	V	V	A	P	K	A	S	V	Q	K	D	.	.	.	F	T	I	D	S	K	T	N	W	T	S	.	.	.	.	L	L	N	G	G	R	L	A	V	G	D
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.												.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.												.	.	.	.
Template Conservation
Template Sequence		G	A	A	L	D	I	S	G	E	D	F	L	D	G	I	D	D	T	N	F	A	L	F	Q	Q	D	G	K	T	Y	G	X	P	V	S	A	W	V	G	A	F	F	Y	N	K	D	I	L	K	K	A	G	Y	D	K	F	P	K	T	W	D	E	F	I	E	X	G	K	K	I	N	S	N	G	S	T	A	F	L	E
Template Known Secondary structure		T		B				T	T		G	G	G	T	T	B		G	G	G	G	G	G	G			T	T					B																			T	T		S	S			S	B														T	T	S
Template Predicted Secondary structure
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160																																			.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	E	H	V	P	A	G	I	Y	A	K	E	A	L	Q	K	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	W	D	T	L	S	P	K	L	A	P	A	E	D	V	R	G	A	L	A	L	V	E	R	N	E	A	P
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	F	N	T	Q	I	A	G	S	F	T	G	L	L	A	S	Y	Y	G	E	Q	G	K	S	G	D	L	D	A	D	I	W	S	G	K	S	T	F	T	K	D	W	T	P	V	F	K	R	W	E	A	A	A	K	A	G	V	I	P	Q	K	S	V	G	L	S	A	D	Q	V	K	Q	E	F	V	S	G	N	L	G
Template Known Secondary structure				S	S	S	S														T	T	T			S	S	T	T						T	S	S																			T	T	S	S		G	G	G	T	T												T	T
Template Predicted Secondary structure
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.													.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.		.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.																					.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.																					.
Query Sequence		L	G	I	V	Y	G	S	D	A	V	A	S	K	G	V	K	V	V	A	T	F	P	E	.	.	.	.	.	.	.	.	.	.	.	.	D	S	H	K	K	V	E	Y	P	V	A	V	V	E	G	H	N	N	A	T	.	V	K	A	F	Y	D	Y	L	K	G	P	Q	A	A	E	I	F	K	R	Y	G	F	T	I
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.																					.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Conservation
Template Sequence		V	X	R	S	G	P	W	D	L	P	D	L	Q	K	S	D	I	D	F	G	V	A	P	F	P	A	Y	S	K	E	D	G	Q	W	I	N	G	G	P	D	Q	G	F	A	I	A	S	R	A	S	D	K	E	K	A	A	A	K	K	F	L	A	Y	L	N	S	E	E	G	L	E	A	F	T	S	A	A	G	T	L
Template Known Secondary structure							G	G	G							S	S										B	S	S		T	T									S						B	T	T	S																T	S												T
Template Predicted Secondary structure
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions