Job Description P37329 Confidence 96.60% Date Thu Jan 5 11:55:15 GMT 2012 Rank 126 Aligned Residues 222 % Identity 8% Template c3pppA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:glycine betaine/carnitine/choline-binding protein; PDBTitle: structures of the substrate-binding protein provide insights into the2 multiple compatible solutes binding specificities of bacillus3 subtilis abc transporter opuc Resolution 2.40 Å

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		27	.	.	30	.	.	.	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.	.	60			.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure													.												.													.	.																																							.	.	.	.
Query SS confidence													.												.													.	.																																							.	.	.	.
Query Sequence		G	K	I	T	V	F	A	A	A	S	L	.	T	N	A	M	Q	D	I	A	T	Q	F	.	K	K	E	K	G	V	D	V	V	S	S	F	.	.	A	S	S	S	T	L	A	R	Q	I	E	A	G	A	P	A	D	L	F	I	S	A	D	Q	K	W	M	D	Y	A	V	D	K	K	A	I	D	T	.	.	.	.
Query Conservation													.												.													.	.																																							.	.	.	.
Alig confidence													.												.													.	.																																							.	.	.	.
Template Conservation
Template Sequence		D	T	I	K	I	G	A	Q	S	M	T	E	S	E	I	V	A	N	M	I	A	Q	L	I	E	H	D	T	D	L	N	T	A	L	V	K	N	L	G	S	N	Y	V	Q	H	Q	A	M	L	G	G	D	I	D	I	S	A	T	R	Y	S	G	T	D	L	T	S	T	L	G	K	E	A	E	K	D	P	K	K	A
Template Known Secondary structure										S	S																			S											S										T	T	S		S													T	T	S
Template Predicted Secondary structure
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
																99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	T	R	Q	T	L	L	G	N	S	L	V	V	V	A	P	K	A	S	V	Q	K	D	F	T	I	D	S	K	T	N	W	T	S	L	L	N	G	G	R	L	A	V	G	D	P	E	H	V	P	A	G	I	Y	A	K	E	A	L	Q	K	L	G	A	W	D
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																																		.
Template Conservation																																																																																	.
Template Sequence		L	N	I	V	Q	N	E	F	Q	K	R	F	S	Y	K	W	F	D	S	Y	G	F	D	N	T	Y	A	F	T	V	T	K	K	F	A	E	K	E	H	I	N	T	V	S	D	L	K	K	N	A	S	Q	Y	K	L	G	V	D	N	A	W	L	K	R	K	G	D	G	Y	K	G	F	V	S	T	Y	G	F	E	.
Template Known Secondary structure																						S		B																T		S	B	G	G	G	G	G	G	G	G	G	G							T	T	T	T	T		S	S	S	S												.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.			.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																																																																	.	.														.	.
Query SS confidence																																																																	.	.														.	.
Query Sequence		T	L	S	P	K	L	A	P	A	E	D	V	R	G	A	L	A	L	V	E	R	N	E	A	P	L	G	I	V	Y	G	S	D	A	V	A	S	K	G	V	K	V	V	A	T	F	P	E	D	S	H	K	K	V	E	Y	P	V	A	V	V	E	G	.	.	H	N	N	A	T	V	K	A	F	Y	D	Y	L	.	.
Query Conservation																																																																	.	.														.	.
Alig confidence		.	.	.																																																													.	.														.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	F	G	T	T	Y	P	M	Q	I	G	L	V	Y	D	A	V	K	N	G	K	M	D	A	V	L	A	Y	S	T	D	G	R	I	K	A	Y	D	L	K	I	L	K	D	D	K	R	F	F	P	P	Y	D	C	S	P	V	I	P	E	K	V	L	K	E	H	P	E	L	E	G	V	I	N	K	L	I	G
Template Known Secondary structure		.	.	.		S							G	G	G							T	T	S		S						T	T		T					T	T					B		T	T			S				B													S	T	T							T	T	T	T
Template Predicted Secondary structure		.	.	.
Template SS confidence
					191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
			241	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	K	G	P	Q	A	A	E	I	F	K	R	Y
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		Q	I	D	T	E	T	M	Q	E	L	N	Y	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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