Job Description P37329 Confidence 97.81% Date Thu Jan 5 11:55:15 GMT 2012 Rank 104 Aligned Residues 209 % Identity 7% Template c3oxnD_ PDB info PDB header:transcription regulator Chain: D: PDB Molecule:putative transcriptional regulator, lysr family; PDBTitle: the crystal structure of a putative transcriptional regulator from2 vibrio parahaemolyticus Resolution 2.70 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.												.
Query SS confidence																		.												.
Query Sequence		A	L	A	D	E	G	K	I	T	V	F	A	A	A	S	L	.	T	N	A	M	Q	D	I	A	T	Q	F	.	K	K	E	K	G	V	D	V	V	S	S	F	A	S	S	S	T	L	A	R	Q	I	E	A	G	A	P	A	D	L	F	I	S	A	D	Q	K	W	M	D	Y	A	V	D	K	K	A	I	D	T	A
Query Conservation																		.												.
Alig confidence																		.												.																																		.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.	.	.	.	.
Template Sequence		P	Q	Q	C	D	Q	T	F	T	I	A	T	T	D	Y	A	X	Q	T	I	L	P	F	A	L	P	R	I	Y	Q	E	A	P	N	V	S	F	N	F	L	P	L	Q	H	D	R	L	S	D	Q	L	T	Y	E	G	A	D	L	A	I	C	R	.	.	.	.	.	.	.	.	.	.	P	T	G	P	V	E	P	L
Template Known Secondary structure				S																T														T	T										G	G	G							T	S			S						.	.	.	.	.	.	.	.	.	.		S	S			T	T	S
Template Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.											.	.	.	.	.	.	.	180
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	Q	T	L	L	G	N	S	L	V	V	V	A	P	K	A	S	V	Q	K	D	F	T	I	D	S	K	T	N	W	T	S	L	L	N	G	G	R	L	A	V	G	D	P	E	H	V	P	A	G	I	Y	A	K	E	A	L	Q	K	L	G	A	W	D	T	L	S	P	K	L	A	P	A	E	D	V	R	G	A
Query Conservation
Alig confidence																																				.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.
Template Sequence		R	S	E	I	L	G	R	V	G	V	L	C	L	L	S	K	Q	H	P	L	A	N	Q	E	X	S	L	D	D	Y	L	S	H	P	.	.	.	.	.	.	.	.	.	.	H	A	X	I	A	I	S	D	G	V	K	A	L	I	E	Q	A	L	I	D	K	P	Q	R	K	X	V	L	R	A	Y	H	L	E	A	A
Template Known Secondary structure																	T	T	S	G	G	G	S	S										S		.	.	.	.	.	.	.	.	.	.					S													T	S	S	S										S
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.											.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230		.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure																																																					.
Query SS confidence																																																					.
Query Sequence		L	A	L	V	E	R	N	E	A	P	L	G	I	V	Y	G	S	D	A	V	A	S	K	G	V	K	V	V	A	T	F	P	E	D	S	H	K	K	V	E	Y	P	V	A	V	V	E	G	H	N	N	.	A	T	V	K	A	F	Y	D	Y	L	K	G	P	Q	A	A	E	I	F	K	R
Query Conservation																																																					.
Alig confidence																																																					.												.
Template Conservation																																																																	.
Template Sequence		L	A	I	V	D	T	L	P	I	I	I	T	V	P	A	D	L	A	Y	L	V	A	E	R	Y	D	L	V	V	K	P	L	P	F	Q	F	T	P	F	D	Y	S	X	I	W	H	A	R	C	E	H	S	P	A	Q	E	W	L	R	S	V	V	R	.	E	E	C	S	R	L	I	A	K
Template Known Secondary structure						T	T	S																			T							S	S													G	G	G	T	T													.
Template Predicted Secondary structure																																																																	.
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.		.	.	.	.	.	.	320	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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