Job Description P37329 Confidence 89.61% Date Thu Jan 5 11:55:15 GMT 2012 Rank 154 Aligned Residues 177 % Identity 15% Template c3onmB_ PDB info PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator lrha; PDBTitle: effector binding domain of lysr-type transcription factor rovm from y.2 pseudotuberculosis Resolution 2.40 Å

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		28	.	30	.	.	.	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		K	I	T	V	F	A	A	A	S	L	.	T	N	A	M	Q	D	I	A	T	Q	F	K	K	E	K	G	V	D	V	V	S	S	F	A	S	S	S	T	L	A	R	Q	I	E	A	G	A	P	A	D	L	F	I	S	A	D	Q	K	W	M	D	Y	A	V	D	K	K	A	I	D	T	A	T	R	Q	T	L	L	G
Query Conservation												.
Alig confidence												.																																																.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	L	I	I	G	A	S	D	D	T	A	D	T	L	L	P	F	L	L	N	R	V	A	T	L	Y	P	L	A	I	D	V	R	V	K	R	S	P	F	I	A	D	M	L	S	S	G	E	V	D	L	A	I	T	T	A	K	V	.	.	.	.	.	.	.	.	.	.	.	.	D	S	H	P	H	V	I	L	R	T
Template Known Secondary structure													T	T	T									T	T	S												G	G	G							T	T	S		S					S	S			.	.	.	.	.	.	.	.	.	.	.	.	S	S	S
Template Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.													.	.	160	.	.	.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	S	L	V	V	V	A	P	K	A	S	V	Q	K	D	F	T	I	D	S	K	T	N	W	T	S	L	L	N	G	G	R	L	A	V	G	D	P	E	H	V	P	A	G	I	Y	A	K	E	A	L	Q	K	L	G	A	W	D	T	L	S	P	K	L	A	P	A	E	D	V	R	G	A	L	A	L	V	E	R	N
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Template Sequence		S	P	T	L	W	Y	C	S	V	D	Y	Q	F	Q	P	G	E	P	V	P	L	.	.	.	.	.	.	.	.	.	.	.	.	.	V	V	M	D	E	P	S	L	Y	R	E	M	A	I	E	H	L	T	Q	A	G	V	P	.	.	.	W	R	I	A	Y	V	A	S	S	L	S	A	I	R	A	A	V	R	A	G
Template Known Secondary structure										T	T					S	S	S					.	.	.	.	.	.	.	.	.	.	.	.	.				S	S	S														T	T			.	.	.								S	S										T	T
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.														190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.				.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																															.
Query SS confidence																															.
Query Sequence		E	A	P	L	G	I	V	Y	G	S	D	A	V	A	S	K	G	V	K	V	V	A	T	F	P	E	D	S	H	.	K	K	V	E	Y	P	V	A	V	V	E	G	H	N	N	A	T	V	K	A
Query Conservation																															.
Alig confidence		.	.	.																											.
Template Conservation		.	.	.
Template Sequence		.	.	.	L	G	V	T	A	R	P	I	E	M	M	S	P	D	L	R	V	L	G	E	T	E	G	L	P	G	L	P	E	T	R	Y	V	L	C	K	D	K	Q	C	D	N	E	L	A	L	A
Template Known Secondary structure		.	.	.	S		B					G	G	G			T	T						G	G	G	T															S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions