Job Description P37329 Confidence 98.67% Date Thu Jan 5 11:55:15 GMT 2012 Rank 86 Aligned Residues 211 % Identity 11% Template c3ombA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:extracellular solute-binding protein, family 1; PDBTitle: crystal structure of extracellular solute-binding protein from2 bifidobacterium longum subsp. infantis Resolution 2.10 Å

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		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70					.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure																														.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	I	A	T	Q	F	K	K	E	K	G	V	D	V	V	S	S	F	A	S	S	S	T	L	A	R	Q	I	.	.	.	.	E	A	G	A	P	A	D	L	F	I	S	A	D	Q	K	W	M	D	Y	A	V	D	K	K	A	I	D	T	A	T	R	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																														.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.												.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																													.
Template Sequence		Q	W	A	K	D	L	E	A	D	C	D	C	K	I	E	W	Q	E	V	T	R	E	A	W	A	Q	Q	K	N	A	T	L	A	S	G	D	I	A	D	V	N	L	N	.	G	Y	G	A	V	E	A	Y	Q	Y	P	G	X	F	E	D	L	S	K	D	L	D	K	L	P	N	V	K	A	F	F	K	Q	K	P	D
Template Known Secondary structure												T	S																							T				S				S	.	S			T						S	T	T	S	B			G	G	G	G	G	G	G
Template Predicted Secondary structure																																													.
Template SS confidence
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
																							103	.	.	.	.	.	.	110	.	.	.	.	.	.			.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	L	L	G	N	S	L	V	V	V	A	P	K	A	.	.	S	V	Q	K	D	F	T	I	D	S	K	T	N	W	T	S	L	L	N	G	G	R	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	K	K	X	S	T	D	S	K	G	R	I	Y	A	I	A	D	G	R	G	K	A	Y	S	G	T	G	Q	H	X	L	I	N	K	A	W	L	D	K	L	G	L	Q	V	P	T	T	W	D	E	L	E	N	V	L	K	A	F	K	T	Q	D	P	N	G	N	G	Q	A	D	E	I	P	X	N	I	K	K	L	E
Template Known Secondary structure									T	T	S			S	S							G	G	G		S		S														T						B														S		T	T		S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
																																							141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	G	D	P	E	H	V	P	A	G	I	Y	A	K	E	A	L	Q	K	L	G	A	W	D	T	L	S	P	K	L	A	P	A	E	D	V	R	G	A	L	A	L	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	S	Y	F	T	W	Y	S	P	X	L	L	L	N	S	T	G	I	V	T	G	F	N	K	G	V	S	E	Y	G	F	Y	A	K	N	G	V	V	K	S	F	L	T	S	D	E	Y	K	E	V	I	K	Y	Y	H	K	L	I	S	E	G	L	I	P	A	E	W	A	T	K	D	D	D	A	Y	N	A	D	Q	I
Template Known Secondary structure		S	S	S			T	T		G	G	G	G	G	G	G	G	T					T	T	S	S	G	G	G	G	T					T	T					G	G	G	S																T	T	S	S		T	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
		184	.	.	.	.	.	190	.				.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.																.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.		.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure										.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Query SS confidence										.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Query Sequence		E	R	N	E	A	P	L	G	.	.	.	I	V	Y	G	S	D	A	V	A	S	K	G	V	K	V	V	A	T	F	P	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	S	H	K	K	V	E	Y	P	V	A	V	V	E	G	H	N	N	A	T	.	V	K	A	F	Y	D	Y	L	K	G	P	Q
Query Conservation										.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Alig confidence										.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Conservation
Template Sequence		S	D	G	K	T	A	K	T	G	V	V	F	G	W	S	P	S	D	N	F	G	K	L	K	D	Q	Y	I	A	X	P	V	P	S	A	P	G	V	S	P	D	Q	T	V	W	D	G	S	S	S	E	L	S	P	A	G	L	S	I	S	S	H	A	A	N	K	D	A	A	L	K	L	A	N	L	L	Y	S	E	K
Template Known Secondary structure		T	T	S	S	S									S							G	G	G	G	G	G								B		T	T			G	G	G								S	S									B	T	T		T	T												T	S
Template Predicted Secondary structure
Template SS confidence
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	E	I	F	K	R	Y	G	F	T	I	K
Query Conservation
Alig confidence								.	.	.
Template Conservation								.	.	.
Template Sequence		Y	S	V	Q	Q	F	.	.	.	L	G	S	F
Template Known Secondary structure								.	.	.			S	B
Template Predicted Secondary structure								.	.	.
Template SS confidence
		377	.	.	380	.	.				.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions