Job Description P37329 Confidence 96.59% Date Thu Jan 5 11:55:15 GMT 2012 Rank 127 Aligned Residues 219 % Identity 9% Template c3o66A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:glycine betaine/carnitine/choline abc transporter; PDBTitle: crystal structure of glycine betaine/carnitine/choline abc transporter Resolution 1.86 Å

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		26	.	.	.	30	.	.	.	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.	.	60					.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure														.												.													.	.	.	.																																							.
Query SS confidence														.												.													.	.	.	.																																							.
Query Sequence		E	G	K	I	T	V	F	A	A	A	S	L	.	T	N	A	M	Q	D	I	A	T	Q	F	.	K	K	E	K	G	V	D	V	V	S	S	F	.	.	.	.	A	S	S	S	T	L	A	R	Q	I	E	A	G	A	P	A	D	L	F	I	S	A	D	Q	K	W	M	D	Y	A	V	D	K	K	A	I	D	T	.
Query Conservation														.												.													.	.	.	.																																							.
Alig confidence														.												.													.	.	.	.																																							.
Template Conservation
Template Sequence		K	N	D	V	K	I	T	A	L	S	T	S	E	S	Q	I	I	S	H	X	L	R	L	L	I	E	H	D	T	H	G	K	I	K	P	T	L	V	N	N	L	G	S	S	T	I	Q	H	N	A	L	I	N	G	D	A	N	I	S	G	V	R	Y	N	G	T	D	L	T	G	A	L	K	E	A	P	I	K	D	P
Template Known Secondary structure											S	S																		T	T	T	S										S	S											T	S		S													T	T	T							S
Template Predicted Secondary structure
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
																				99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	T	R	Q	T	L	L	G	N	S	L	V	V	V	A	P	K	A	S	V	Q	K	D	F	T	I	D	S	K	T	N	W	T	S	L	L	N	G	G	R	L	A	V	G	D	P	E	H	V	P	A	G	I	Y	A	K	E	A	L	Q	K	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Template Conservation																																											.
Template Sequence		K	K	A	X	I	A	T	Q	Q	G	F	K	K	K	F	D	Q	T	F	F	D	S	Y	G	F	A	N	T	Y	A	F	X	V	T	K	E	T	A	K	K	Y	.	H	L	E	T	V	S	D	L	A	K	H	S	K	D	L	R	L	G	X	D	S	S	W	X	N	G	D	G	Y	E	G	F	K	K	E	Y	G	F
Template Known Secondary structure																	S								S		B																.	T		S	B	S	G	G	G	T	T	T	G	G	G							G	G	G					S
Template Predicted Secondary structure																																											.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.			.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																					.	.
Query SS confidence																																																																					.	.
Query Sequence		G	A	W	D	T	L	S	P	K	L	A	P	A	E	D	V	R	G	A	L	A	L	V	E	R	N	E	A	P	L	G	I	V	Y	G	S	D	A	V	A	S	K	G	V	K	V	V	A	T	F	P	E	D	S	H	K	K	V	E	Y	P	V	A	V	V	E	G	.	.	H	N	N	A	T	V	K	A	F	Y	D
Query Conservation																																																																					.	.
Alig confidence		.	.	.	.	.	.																																																														.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	D	F	G	T	V	R	P	X	Q	I	G	L	V	Y	D	A	L	N	T	E	K	L	D	V	A	L	G	Y	S	T	D	G	R	I	A	A	Y	D	L	K	V	L	K	D	D	K	Q	F	F	P	P	Y	A	A	S	A	V	A	T	N	E	L	L	R	Q	H	P	E	L	K	T	T	I	N
Template Known Secondary structure		.	.	.	.	.	.			S							G	G	G							T	T	S		S						T	T							T	T					B		T	T			S				B														T
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
		239	240				.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure				.	.	.
Query SS confidence				.	.	.
Query Sequence		Y	L	.	.	.	K	G	P	Q	A	A	E	I	F	K	R
Query Conservation				.	.	.
Alig confidence				.	.	.
Template Conservation
Template Sequence		K	L	T	G	K	I	S	T	S	E	X	Q	R	L	N	Y
Template Known Secondary structure		T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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