Job Description P37329 Confidence 93.64% Date Thu Jan 5 11:55:15 GMT 2012 Rank 147 Aligned Residues 205 % Identity 13% Template c3mplA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:virulence sensor protein bvgs; PDBTitle: crystal structure of bordetella pertussis bvgs vft2 domain (double2 mutant f375e/q461e) Resolution 2.10 Å

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		24	.	.	.	.	.	30	.	.	.	.											.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.
Query Sequence		A	D	E	G	K	I	T	V	F	A	A	.	.	.	.	.	.	.	.	.	.	A	S	L	T	N	A	M	Q	D	I	A	T	Q	F	K	K	E	K	G	V	D	V	V	S	S	F	A	S	S	S	T	L	A	R	Q	I	E	A	G	A	P	A	D	L	F	I	S	A	D	Q	K	W	M	D	Y	A	V	D	K
Query Conservation													.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.																																																			.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.
Template Sequence		A	D	H	P	V	V	K	V	A	V	L	N	L	F	A	P	F	T	L	F	R	E	Q	F	G	G	I	S	A	A	V	L	Q	L	L	Q	L	R	T	G	L	D	F	E	I	I	G	V	D	T	V	E	E	L	I	A	K	L	R	S	G	E	A	D	M	A	G	A	L	E	V	.	.	.	.	.	.	N	S	A
Template Known Secondary structure					S								T			T	T	T									S																							S												T	S	S	S								.	.	.	.	.	.		G	G
Template Predicted Secondary structure																																																																									.	.	.	.	.	.
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.							.	.	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	I	D	T	A	T	R	Q	T	L	L	G	N	S	L	V	V	V	A	P	K	A	S	V	Q	K	D	F	T	I	D	S	K	T	N	W	T	S	L	L	N	G	G	R	L	A	V	G	D	P	E	H	V	P	A	G	I	Y	A	K	E	A	L	Q	K	L	G	A	W	D	T	L	S	P	K	L	A	P	A
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.
Template Sequence		R	E	S	F	L	S	F	S	R	P	Y	V	R	N	G	M	V	I	V	T	R	Q	D	P	D	A	P	V	D	A	D	H	.	.	.	.	.	.	.	.	.	L	D	G	R	T	V	A	L	V	R	N	S	A	A	I	P	L	L	Q	R	R	Y	.	.	.	.	.	.	.	.	.	P	Q	A	K	V	V	T	A
Template Known Secondary structure		G	T	T	T																				S	S			T	T	T	T		.	.	.	.	.	.	.	.	.		T	T	S						T	T		T								S	S	.	.	.	.	.	.	.	.	.	T	T
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.
Template SS confidence
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.										.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.										.	.	.	.	.	.	440	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.				.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230			.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.																																			.	.
Query SS confidence																									.	.	.																																			.	.
Query Sequence		E	D	V	R	G	A	L	A	L	V	E	R	N	E	A	P	L	G	I	V	Y	G	S	.	.	.	D	A	V	A	S	K	G	V	K	V	V	A	T	F	P	E	D	S	H	K	K	V	E	Y	P	V	A	V	V	E	G	H	N	N	.	.	A	T	V	K	A	F	Y	D	Y	L	K	G	P	Q	A	A	E	I
Query Conservation																									.	.	.																																			.	.
Alig confidence																									.	.	.																																			.	.
Template Conservation
Template Sequence		D	N	P	S	E	A	M	L	M	V	A	N	G	Q	A	D	A	V	V	E	T	Q	I	S	A	S	Y	Y	V	N	R	Y	F	A	G	K	L	R	I	A	S	A	L	D	L	P	P	A	E	I	A	L	A	T	T	R	G	Q	T	E	L	M	S	I	L	N	K	A	L	Y	S	I	S	N	D	E	L	A	S	I
Template Known Secondary structure		S	S											T	S		S																		T	T	T									S											T	T														T	S
Template Predicted Secondary structure
Template SS confidence
		442	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.
		249	250	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	K	R	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	S	R	W
Template Known Secondary structure				T	T
Template Predicted Secondary structure
Template SS confidence
		522	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions