Job Description P37329 Confidence 94.91% Date Thu Jan 5 11:55:15 GMT 2012 Rank 143 Aligned Residues 193 % Identity 10% Template c3kzgB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:arginine 3rd transport system periplasmic binding PDBTitle: crystal structure of an arginine 3rd transport system2 periplasmic binding protein from legionella pneumophila Resolution 2.06 Å

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	L	T	N	A	M	Q	D	I	A	T	Q	F	K	K	E	K	G	V	D	V	V	S	S	F	A	S	S	S	T	L	A	R	Q	I	E	A	G	A	P	A	D	L	F	I	S	A	D	Q	K	W	M	D	Y	A	V	D	K	K	A	I	D	T	A	T	R	Q	T	L	L	G	N	S	L	V	V	V	A	P
Query Conservation
Alig confidence																																									.																						.	.	.	.	.
Template Conservation																																									.																						.	.	.	.	.
Template Sequence		S	S	L	Y	G	F	D	I	D	L	X	Q	E	I	C	R	R	L	H	A	T	C	T	F	E	A	Y	I	F	D	D	L	F	P	A	L	K	N	R	.	E	V	D	L	V	I	A	S	X	I	I	T	D	E	R	K	K	H	F	I	F	.	.	.	.	.	S	L	P	Y	X	E	S	N	S	Q	Y	I	T	T
Template Known Secondary structure		S				S														T										G	G	G							T	T	.	S	S	S				S	S		B							T	T				.	.	.	.	.				S	B
Template Predicted Secondary structure																																									.																						.	.	.	.	.
Template SS confidence
		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.		.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.						100	.	.	.	.	.	.	.	.	.	110	.	.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	S	V	Q	K	D	F	T	I	D	S	K	T	N	W	T	S	L	L	N	G	G	R	L	A	V	G	D	P	E	H	V	P	A	G	I	Y	A	K	E	A	L	Q	K	L	G	A	W	D	T	L	S	P	K	L	A	P	A	E	D	V	R	G	A	L	A	L	V	E	R	N	E	A	P	L	G	I	V	Y
Query Conservation
Alig confidence						.	.	.	.	.								.	.	.	.																				.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.								.	.	.	.																				.	.	.	.	.	.	.	.	.	.
Template Sequence		V	D	S	K	.	.	.	.	.	I	S	T	F	D	D	L	.	.	.	.	H	G	K	K	I	G	V	R	K	G	T	P	Y	A	R	Q	V	L	S	.	.	.	.	.	.	.	.	.	.	E	N	R	N	N	Q	V	I	F	Y	E	L	I	Q	D	X	L	L	G	L	S	N	N	Q	V	D	A	S	L	X	D
Template Known Secondary structure		T	T		S	.	.	.	.	.			S	G	G	G	G	.	.	.	.	T	T							T	T	S	T								.	.	.	.	.	.	.	.	.	.	T		S								S	S										T	T	S	S	S
Template Predicted Secondary structure						.	.	.	.	.								.	.	.	.																				.	.	.	.	.	.	.	.	.	.
Template SS confidence
		114	.	.	.						.	.	120	.	.	.	.					.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.											.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		195	.	.	.	.	200	.	.	.	.	.	.										.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230			.	.	.	.	.	.	.	.	.	240	.	.	.		.	.	.	.	.	.	250	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.																									.	.														.
Query SS confidence														.	.	.	.	.	.	.	.	.																									.	.														.
Query Sequence		G	S	D	A	V	A	S	K	G	V	K	V	.	.	.	.	.	.	.	.	.	V	A	T	F	P	E	D	S	H	K	K	V	E	Y	P	V	A	V	V	E	G	H	N	N	.	.	A	T	V	K	A	F	Y	D	Y	L	K	G	P	.	Q	A	A	E	I	F	K	R	Y
Query Conservation														.	.	.	.	.	.	.	.	.																									.	.														.
Alig confidence														.	.	.	.	.	.	.	.	.																									.	.														.
Template Conservation
Template Sequence		Y	E	A	A	K	Y	W	X	A	S	E	P	Y	A	Y	K	L	I	G	K	K	Y	K	L	I	G	K	K	I	S	I	G	E	G	Y	S	I	X	A	N	P	D	Q	F	V	L	I	K	K	I	N	K	I	L	L	E	X	E	A	D	G	T	Y	L	R	L	Y	S	E	Y
Template Known Secondary structure								T	T	S	S	S		S	S		T	T	T			S											T	T		B						G	G	G																		T
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions