Job Description P37329 Confidence 99.88% Date Thu Jan 5 11:55:15 GMT 2012 Rank 24 Aligned Residues 226 % Identity 23% Template c3k6wA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:solute-binding protein ma_0280; PDBTitle: apo and ligand bound structures of moda from the archaeon2 methanosarcina acetivorans Resolution 2.45 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																											.																									.
Query SS confidence																											.																									.
Query Sequence		G	K	I	T	V	F	A	A	A	S	L	T	N	A	M	Q	D	I	A	T	Q	F	K	K	E	.	K	G	V	D	V	V	S	S	F	A	S	S	S	T	L	A	R	Q	I	E	A	G	A	P	.	A	D	L	F	I	S	A	D	Q	K	W	M	D	Y	A	V	D	K	K	A	I	D	T	A	T	R	Q	T	L
Query Conservation																											.																									.
Alig confidence																											.																									.																											.	.
Template Conservation																																																																															.	.
Template Sequence		E	V	L	T	V	F	H	A	G	S	L	S	V	P	F	E	E	L	E	A	E	F	E	A	Q	H	P	G	V	D	V	Q	R	E	A	A	G	S	A	Q	S	V	R	K	I	T	E	L	G	K	K	A	D	V	L	A	S	A	D	Y	A	L	I	P	S	L	M	V	P	E	Y	A	D	W	Y	A	A	.	.	F
Template Known Secondary structure										G	G	G																T	T																			T	S					S					S	S	T	T						T	T	T	T	T		S					.	.
Template Predicted Secondary structure																																																																															.	.
Template SS confidence
		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.			.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	G	N	S	L	V	V	V	A	P	K	A	S	V	Q	K	D	F	T	I	D	S	K	T	N	W	T	S	L	L	N	G	G	R	L	A	V	G	D	P	E	H	V	P	A	G	I	Y	A	K	E	A	L	Q	K	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	R	N	Q	M	I	L	A	Y	T	N	E	S	K	Y	G	D	E	I	N	T	D	N	W	Y	E	I	L	R	R	P	D	V	R	Y	G	F	S	N	P	N	D	D	P	A	G	Y	R	S	Q	M	V	T	Q	L	A	E	S	Y	Y	N	D	D	M	I	Y	D	D	L	M	L	A	N	T	G	M	T	L	T	T
Template Known Secondary structure												T	T	S	T	T	T	T	S			T	T	T							S	T	T								T	T	T																		T	T		T	T						T	T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
															161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.																					.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	W	D	T	L	S	P	K	L	A	P	A	E	D	V	R	G	A	L	A	L	V	E	R	N	E	A	P	L	G	I	V	Y	G	S	D	A	V	A	S	K	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	K	V	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	E	N	G	T	A	L	I	H	V	P	A	S	E	E	I	S	P	N	T	S	K	I	M	L	R	S	M	E	V	E	L	S	S	A	L	E	T	G	E	I	D	Y	L	Y	I	Y	R	S	V	A	E	Q	H	G	F	E	Y	V	A	L	P	P	A	I	D	L	S	S	L	E	Y	A	D	N	Y	S	K	V	Q
Template Known Secondary structure			T	T	S									G	G	G	S				T	T	T					S	S	G	G	G	S						T	T	S		S													T								T	T	T	S	S			G	G	G					T	T
Template Predicted Secondary structure
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
		208	.	210	.	.	.	.				.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.		.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure									.	.	.																			.
Query SS confidence									.	.	.																			.
Query Sequence		A	T	F	P	E	D	S	.	.	.	H	K	K	V	E	Y	P	V	A	V	V	E	G	H	N	N	A	T	.	V	K	A	F	Y	D	Y	L	K	G	P	Q	A	A	E	I	F	K	R	Y	G	F
Query Conservation									.	.	.																			.
Alig confidence									.	.	.																			.
Template Conservation
Template Sequence		V	E	M	V	N	G	E	V	V	T	G	S	P	I	V	Y	G	V	T	I	P	N	N	A	E	N	S	E	L	A	T	E	F	V	A	L	L	L	G	E	T	G	Q	Q	I	F	I	E	N	G	Q
Template Known Secondary structure					T	T	S																T	T		S	S													S										T	T
Template Predicted Secondary structure
Template SS confidence
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions