Job Description P37329 Confidence 96.32% Date Thu Jan 5 11:55:15 GMT 2012 Rank 130 Aligned Residues 206 % Identity 15% Template c3k4uA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:binding component of abc transporter; PDBTitle: crystal structure of putative binding component of abc transporter2 from wolinella succinogenes dsm 1740 complexed with lysine Resolution 2.62 Å

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		27	.	.	30	.	.	.	.	.	.	.													.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	K	I	T	V	F	A	A	A	S	L	.	.	.	.	.	.	.	.	.	.	.	.	T	N	A	M	Q	D	I	A	T	Q	F	K	K	E	K	G	V	D	V	V	S	S	F	A	S	S	S	T	L	A	R	Q	I	E	A	G	A	P	A	D	L	F	I	S	A	D	Q	K	W	M	D	Y	A	V	D	K	K
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.																																																								.	.
Template Conservation																																																																																.	.
Template Sequence		G	E	L	R	V	G	L	E	P	G	Y	L	P	F	E	X	K	D	K	K	G	N	V	I	G	F	D	V	D	L	A	R	E	X	A	K	A	X	G	V	K	L	K	L	V	P	T	S	W	D	G	L	I	P	G	L	V	T	E	K	F	D	I	I	I	S	G	X	T	I	S	Q	E	R	N	L	R	V	.	.
Template Known Secondary structure		S								T	T	S	T	T	T					T	T	T				S														T										G	G	G							T	T	S		S				S	S		B							T	T	S	.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	D	T	A	T	R	Q	T	L	L	G	N	S	L	V	V	V	A	P	K	A	S	V	Q	K	D	F	T	I	D	S	K	T	N	W	T	S	L	L	N	G	G	R	L	A	V	G	D	P	E	H	V	P	A	G	I	Y	A	K	E	A	L	Q	K	L	G	A	W	D	T	L	S	P	K	L	A	P	A	E
Query Conservation
Alig confidence		.	.	.	.																															.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.																															.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	N	F	V	E	P	Y	I	V	V	G	Q	S	L	L	V	K	K	G	L	E	K	G	V	K	S	Y	K	D	L	D	.	.	.	.	.	.	.	K	P	E	L	T	L	V	T	K	F	G	V	S	A	E	Y	A	A	K	R	L	F	.	.	.	.	.	.	.	.	K	N	A	K	L	K	T	Y	D
Template Known Secondary structure		.	.	.	.				S		S											T	T	T	T	T	T			S	G	G	G	G		.	.	.	.	.	.	.		S	S							T	T	S											.	.	.	.	.	.	.	.	S	S	S						S
Template Predicted Secondary structure		.	.	.	.																															.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.
Template SS confidence
						81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110								.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.									.	.	.	.	.	.	.	140	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.			.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230			.	.	.	.	.	.	.	.	.	240	.	.	.		.	.	.	.	.	.
Predicted Secondary structure																										.	.																																	.	.														.
Query SS confidence																										.	.																																	.	.														.
Query Sequence		D	V	R	G	A	L	A	L	V	E	R	N	E	A	P	L	G	I	V	Y	G	S	D	A	.	.	V	A	S	K	G	V	K	V	V	A	T	F	P	E	D	S	H	K	K	V	E	Y	P	V	A	V	V	E	G	H	N	N	.	.	A	T	V	K	A	F	Y	D	Y	L	K	G	P	.	Q	A	A	E	I	F
Query Conservation																										.	.																																	.	.														.
Alig confidence																										.	.																																	.	.														.
Template Conservation
Template Sequence		T	E	A	E	A	V	Q	E	V	L	N	G	K	A	D	X	F	I	F	D	L	P	F	N	V	A	F	X	A	Q	K	G	Q	G	Y	L	V	H	L	D	T	S	L	T	Y	E	P	L	G	W	A	I	K	K	G	D	P	D	F	L	N	W	L	N	H	F	L	A	Q	I	K	H	D	G	S	Y	D	E	L	Y
Template Known Secondary structure		S										S	S	S	S																	T	T	T	T	T									S										T	T																			S
Template Predicted Secondary structure
Template SS confidence
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
		250	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	Y	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	R	W	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		222	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions